familiar-package	familiar
.calibration_create_randomised_groups	dot-calibration_create_randomised_groups
.check_class_level_plausibility	dot-check_class_level_plausibility
.check_feature_availability	dot-check_feature_availability
.check_input_identifier_column	dot-check_input_identifier_column
.check_input_plot_args	dot-check_input_plot_args
.check_outcome_type_plausibility	dot-check_outcome_type_plausibility
.check_plot_splitting_variables	dot-check_plot_splitting_variables
.check_survival_time_plausibility	dot-check_survival_time_plausibility
.extract_data	dot-extract_data
.finish_data_preparation	dot-finish_data_preparation
.get_default_sign_size	dot-get_default_sign_size
.get_iteration_data	dot-get_iteration_data
.impute_outcome_type	dot-impute_outcome_type
.load_iterations	dot-load_iterations
.parse_categorical_features	dot-parse_categorical_features
.parse_evaluation_settings	dot-parse_evaluation_settings
.parse_experiment_settings	dot-parse_experiment_settings
.parse_file_paths	dot-parse_file_paths
.parse_general_settings	dot-parse_general_settings
.parse_hyperparameter_optimisation_settings	dot-parse_hyperparameter_optimisation_settings
.parse_initial_settings	dot-parse_initial_settings
.parse_integer_features	dot-parse_integer_features
.parse_model_development_settings	dot-parse_model_development_settings
.parse_preprocessing_settings	dot-parse_preprocessing_settings
.parse_setup_settings	dot-parse_setup_settings
.parse_variable_importance_settings	dot-parse_variable_importance_settings
.plot_permutation_variable_importance	dot-plot_permutation_variable_importance
.plot_univariate_importance	dot-plot_univariate_importance
.update_experimental_design_settings	dot-update_experimental_design_settings
.update_initial_settings	dot-update_initial_settings
aggregate_vimp_table	aggregate_vimp_table-methods
aggregate_vimp_table,character-method	aggregate_vimp_table-methods
aggregate_vimp_table,experimentData-method	aggregate_vimp_table-methods
aggregate_vimp_table,list-method	aggregate_vimp_table-methods
aggregate_vimp_table,NULL-method	aggregate_vimp_table-methods
aggregate_vimp_table,vimpTable-method	aggregate_vimp_table-methods
as_data_object	as_data_object-methods
as_data_object,ANY-method	as_data_object-methods
as_data_object,data.table-method	as_data_object-methods
as_data_object,dataObject-method	as_data_object-methods
as_familiar_collection	as_familiar_collection-methods
as_familiar_collection,ANY-method	as_familiar_collection-methods
as_familiar_collection,character-method	as_familiar_collection-methods
as_familiar_collection,data.table-method	as_familiar_collection-methods
as_familiar_collection,dataObject-method	as_familiar_collection-methods
as_familiar_collection,familiarCollection-method	as_familiar_collection-methods
as_familiar_collection,familiarData-method	as_familiar_collection-methods
as_familiar_collection,familiarDataElementPredictionTable-method	as_familiar_collection-methods
as_familiar_collection,familiarEnsemble-method	as_familiar_collection-methods
as_familiar_collection,familiarModel-method	as_familiar_collection-methods
as_familiar_collection,list-method	as_familiar_collection-methods
as_familiar_data	as_familiar_data-methods
as_familiar_data,ANY-method	as_familiar_data-methods
as_familiar_data,character-method	as_familiar_data-methods
as_familiar_data,dataObject-method	as_familiar_data-methods
as_familiar_data,familiarData-method	as_familiar_data-methods
as_familiar_data,familiarDataElementPredictionTable-method	as_familiar_data-methods
as_familiar_data,familiarEnsemble-method	as_familiar_data-methods
as_familiar_data,familiarModel-method	as_familiar_data-methods
as_familiar_data,list-method	as_familiar_data-methods
as_familiar_ensemble	as_familiar_ensemble-methods
as_familiar_ensemble,ANY-method	as_familiar_ensemble-methods
as_familiar_ensemble,character-method	as_familiar_ensemble-methods
as_familiar_ensemble,familiarEnsemble-method	as_familiar_ensemble-methods
as_familiar_ensemble,familiarModel-method	as_familiar_ensemble-methods
as_familiar_ensemble,familiarNoveltyDetector-method	as_familiar_ensemble-methods
as_familiar_ensemble,list-method	as_familiar_ensemble-methods
as_prediction_table	as_prediction_table
coef	coef-methods
coef,familiarModel-method	coef-methods
dataObject-class	dataObject-class
delayedDataObject-class	delayedDataObject-class
encapsulate_path	encapsulate_path
experimentData-class	experimentData-class
export_all	export_all-methods
export_all,ANY-method	export_all-methods
export_all,familiarCollection-method	export_all-methods
export_auc_data	export_auc_data-methods
export_auc_data,ANY-method	export_auc_data-methods
export_auc_data,familiarCollection-method	export_auc_data-methods
export_calibration_data	export_calibration_data-methods
export_calibration_data,ANY-method	export_calibration_data-methods
export_calibration_data,familiarCollection-method	export_calibration_data-methods
export_calibration_info	export_calibration_info-methods
export_calibration_info,ANY-method	export_calibration_info-methods
export_calibration_info,familiarCollection-method	export_calibration_info-methods
export_confusion_matrix_data	export_confusion_matrix_data-methods
export_confusion_matrix_data,ANY-method	export_confusion_matrix_data-methods
export_confusion_matrix_data,familiarCollection-method	export_confusion_matrix_data-methods
export_decision_curve_analysis_data	export_decision_curve_analysis_data-methods
export_decision_curve_analysis_data,ANY-method	export_decision_curve_analysis_data-methods
export_decision_curve_analysis_data,familiarCollection-method	export_decision_curve_analysis_data-methods
export_feature_expressions	export_feature_expressions-methods
export_feature_expressions,ANY-method	export_feature_expressions-methods
export_feature_expressions,familiarCollection-method	export_feature_expressions-methods
export_feature_similarity	export_feature_similarity-methods
export_feature_similarity,ANY-method	export_feature_similarity-methods
export_feature_similarity,familiarCollection-method	export_feature_similarity-methods
export_fs_vimp	export_fs_vimp-methods
export_fs_vimp,ANY-method	export_fs_vimp-methods
export_fs_vimp,familiarCollection-method	export_fs_vimp-methods
export_hyperparameters	export_hyperparameters-methods
export_hyperparameters,ANY-method	export_hyperparameters-methods
export_hyperparameters,familiarCollection-method	export_hyperparameters-methods
export_ice_data	export_ice_data-methods
export_ice_data,ANY-method	export_ice_data-methods
export_ice_data,familiarCollection-method	export_ice_data-methods
export_model_performance	export_model_performance-methods
export_model_performance,ANY-method	export_model_performance-methods
export_model_performance,familiarCollection-method	export_model_performance-methods
export_model_vimp	export_model_vimp-methods
export_model_vimp,ANY-method	export_model_vimp-methods
export_model_vimp,familiarCollection-method	export_model_vimp-methods
export_partial_dependence_data	export_partial_dependence_data-methods
export_partial_dependence_data,ANY-method	export_partial_dependence_data-methods
export_partial_dependence_data,familiarCollection-method	export_partial_dependence_data-methods
export_permutation_vimp	export_permutation_vimp-methods
export_permutation_vimp,ANY-method	export_permutation_vimp-methods
export_permutation_vimp,familiarCollection-method	export_permutation_vimp-methods
export_prediction_data	export_prediction_data-methods
export_prediction_data,ANY-method	export_prediction_data-methods
export_prediction_data,familiarCollection-method	export_prediction_data-methods
export_risk_stratification_data	export_risk_stratification_data-methods
export_risk_stratification_data,ANY-method	export_risk_stratification_data-methods
export_risk_stratification_data,familiarCollection-method	export_risk_stratification_data-methods
export_risk_stratification_info	export_risk_stratification_info-methods
export_risk_stratification_info,ANY-method	export_risk_stratification_info-methods
export_risk_stratification_info,familiarCollection-method	export_risk_stratification_info-methods
export_sample_similarity	export_sample_similarity-methods
export_sample_similarity,ANY-method	export_sample_similarity-methods
export_sample_similarity,familiarCollection-method	export_sample_similarity-methods
export_shap	export_shap-methods
export_shap,ANY-method	export_shap-methods
export_shap,familiarCollection-method	export_shap-methods
export_univariate_analysis_data	export_univariate_analysis_data-methods
export_univariate_analysis_data,ANY-method	export_univariate_analysis_data-methods
export_univariate_analysis_data,familiarCollection-method	export_univariate_analysis_data-methods
extract_auc_data	extract_auc_data
extract_calibration_data	extract_calibration_data
extract_calibration_info	extract_calibration_info
extract_confusion_matrix	extract_confusion_matrix
extract_decision_curve_data	extract_decision_curve_data
extract_dispatcher,familiarEnsemble,familiarDataElement-method	extract_dispatcher-familiarEnsemble-familiarDataElement-method
extract_experimental_setup	extract_experimental_setup
extract_feature_expression	extract_feature_expression
extract_feature_similarity	extract_feature_similarity
extract_fs_vimp	extract_fs_vimp
extract_hyperparameters	extract_hyperparameters
extract_ice	extract_ice
extract_model_vimp	extract_model_vimp
extract_performance	extract_performance
extract_permutation_vimp	extract_permutation_vimp
extract_predictions	extract_predictions
extract_risk_stratification_data	extract_risk_stratification_data
extract_risk_stratification_info	extract_risk_stratification_info
extract_sample_similarity	extract_sample_similarity
extract_shap	extract_shap
extract_univariate_analysis	extract_univariate_analysis
familiar	familiar
familiarCollection-class	familiarCollection-class
familiarData-class	familiarData-class
familiarDataElement-class	familiarDataElement-class
familiarEnsemble-class	familiarEnsemble-class
familiarHyperparameterLearner-class	familiarHyperparameterLearner-class
familiarMetric-class	familiarMetric-class
familiarModel-class	familiarModel-class
familiarNoveltyDetector-class	familiarNoveltyDetector-class
familiarVimpMethod-class	familiarVimpMethod-class
featureInfo-class	featureInfo-class
featureInfoParameters-class	featureInfoParameters-class
get_class_names	get_class_names-familiarCollection-method
get_class_names,familiarCollection-method	get_class_names-familiarCollection-method
get_data_set_names	get_data_set_names-familiarCollection-method
get_data_set_names,familiarCollection-method	get_data_set_names-familiarCollection-method
get_feature_names	get_feature_names-familiarCollection-method
get_feature_names,familiarCollection-method	get_feature_names-familiarCollection-method
get_learner_names	get_learner_names-familiarCollection-method
get_learner_names,familiarCollection-method	get_learner_names-familiarCollection-method
get_risk_group_names	get_risk_group_names-familiarCollection-method
get_risk_group_names,familiarCollection-method	get_risk_group_names-familiarCollection-method
get_vimp_method_names	get_vimp_method_names-familiarCollection-method
get_vimp_method_names,familiarCollection-method	get_vimp_method_names-familiarCollection-method
get_vimp_table	get_vimp_table-methods
get_vimp_table,character-method	get_vimp_table-methods
get_vimp_table,experimentData-method	get_vimp_table-methods
get_vimp_table,familiarModel-method	get_vimp_table-methods
get_vimp_table,list-method	get_vimp_table-methods
get_vimp_table,NULL-method	get_vimp_table-methods
get_vimp_table,vimpTable-method	get_vimp_table-methods
get_xml_config	get_xml_config
is.encapsulated_path	is.encapsulated_path
is.waive	is.waive
outcomeInfo-class	outcomeInfo-class
plot_auc_precision_recall_curve	plot_auc_precision_recall_curve-methods
plot_auc_precision_recall_curve,ANY-method	plot_auc_precision_recall_curve-methods
plot_auc_precision_recall_curve,familiarCollection-method	plot_auc_precision_recall_curve-methods
plot_auc_roc_curve	plot_auc_roc_curve-methods
plot_auc_roc_curve,ANY-method	plot_auc_roc_curve-methods
plot_auc_roc_curve,familiarCollection-method	plot_auc_roc_curve-methods
plot_calibration_data	plot_calibration_data-methods
plot_calibration_data,ANY-method	plot_calibration_data-methods
plot_calibration_data,familiarCollection-method	plot_calibration_data-methods
plot_confusion_matrix	plot_confusion_matrix-methods
plot_confusion_matrix,ANY-method	plot_confusion_matrix-methods
plot_confusion_matrix,familiarCollection-method	plot_confusion_matrix-methods
plot_decision_curve	plot_decision_curve-methods
plot_decision_curve,ANY-method	plot_decision_curve-methods
plot_decision_curve,familiarCollection-method	plot_decision_curve-methods
plot_feature_selection_occurrence	plot_variable_importance-methods
plot_feature_selection_variable_importance	plot_variable_importance-methods
plot_feature_similarity	plot_feature_similarity-methods
plot_feature_similarity,ANY-method	plot_feature_similarity-methods
plot_feature_similarity,familiarCollection-method	plot_feature_similarity-methods
plot_ice	plot_ice-methods
plot_ice,ANY-method	plot_ice-methods
plot_ice,familiarCollection-method	plot_ice-methods
plot_kaplan_meier	plot_kaplan_meier-methods
plot_kaplan_meier,ANY-method	plot_kaplan_meier-methods
plot_kaplan_meier,familiarCollection-method	plot_kaplan_meier-methods
plot_model_performance	plot_model_performance-methods
plot_model_performance,ANY-method	plot_model_performance-methods
plot_model_performance,familiarCollection-method	plot_model_performance-methods
plot_model_signature_occurrence	plot_variable_importance-methods
plot_model_signature_variable_importance	plot_variable_importance-methods
plot_pd	plot_pd-methods
plot_pd,ANY-method	plot_pd-methods
plot_permutation_variable_importance	plot_permutation_variable_importance-methods
plot_permutation_variable_importance,ANY-method	plot_permutation_variable_importance-methods
plot_permutation_variable_importance,familiarCollection-method	plot_permutation_variable_importance-methods
plot_sample_clustering	plot_sample_clustering-methods
plot_sample_clustering,ANY-method	plot_sample_clustering-methods
plot_sample_clustering,familiarCollection-method	plot_sample_clustering-methods
plot_shap_dependence	plot_shap_dependence-methods
plot_shap_dependence,ANY-method	plot_shap_dependence-methods
plot_shap_dependence,familiarCollection-method	plot_shap_dependence-methods
plot_shap_force	plot_shap_force-methods
plot_shap_force,ANY-method	plot_shap_force-methods
plot_shap_force,familiarCollection-method	plot_shap_force-methods
plot_shap_summary	plot_shap_summary-methods
plot_shap_summary,ANY-method	plot_shap_summary-methods
plot_shap_summary,familiarCollection-method	plot_shap_summary-methods
plot_shap_waterfall	plot_shap_waterfall-methods
plot_shap_waterfall,ANY-method	plot_shap_waterfall-methods
plot_shap_waterfall,familiarCollection-method	plot_shap_waterfall-methods
plot_univariate_importance	plot_univariate_importance-methods
plot_univariate_importance,ANY-method	plot_univariate_importance-methods
plot_univariate_importance,familiarCollection-method	plot_univariate_importance-methods
plot_variable_importance	plot_variable_importance-methods
plot_variable_importance,ANY-method	plot_variable_importance-methods
plot_variable_importance,familiarCollection-method	plot_variable_importance-methods
precompute_data_assignment	precompute_data_assignment
precompute_feature_info	precompute_feature_info
precompute_vimp	precompute_vimp
predict	predict-methods
predict,character-method	predict-methods
predict,familiarEnsemble-method	predict-methods
predict,familiarModel-method	predict-methods
predict,familiarNoveltyDetector-method	predict-methods
predict,list-method	predict-methods
set_class_names	set_class_names-familiarCollection-method
set_class_names,familiarCollection-method	set_class_names-familiarCollection-method
set_data_set_names	set_data_set_names-familiarCollection-method
set_data_set_names,familiarCollection-method	set_data_set_names-familiarCollection-method
set_feature_names	set_feature_names-familiarCollection-method
set_feature_names,familiarCollection-method	set_feature_names-familiarCollection-method
set_learner_names	set_learner_names-familiarCollection-method
set_learner_names,familiarCollection-method	set_learner_names-familiarCollection-method
set_object_name,familiarData-method	set_object_name-familiarData-method
set_object_name,familiarEnsemble-method	set_object_name-familiarEnsemble-method
set_object_name,familiarModel-method	set_object_name-familiarModel-method
set_object_name,familiarNoveltyDetector-method	set_object_name-familiarNoveltyDetector-method
set_risk_group_names	set_risk_group_names-familiarCollection-method
set_risk_group_names,familiarCollection-method	set_risk_group_names-familiarCollection-method
set_vimp_method_names	set_vimp_method_names-familiarCollection-method
set_vimp_method_names,familiarCollection-method	set_vimp_method_names-familiarCollection-method
summary	summary-methods
summary,familiarModel-method	summary-methods
summon_familiar	summon_familiar
theme_familiar	theme_familiar
train_familiar	train_familiar
update_model_dir_path	update_model_dir_path-methods
update_model_dir_path,ANY-method	update_model_dir_path-methods
update_model_dir_path,familiarEnsemble-method	update_model_dir_path-methods
update_object	update_object-methods
update_object,ANY-method	update_object-methods
update_object,experimentData-method	update_object-methods
update_object,familiarCollection-method	update_object-methods
update_object,familiarData-method	update_object-methods
update_object,familiarEnsemble-method	update_object-methods
update_object,familiarModel-method	update_object-methods
update_object,familiarNoveltyDetector-method	update_object-methods
update_object,featureInfo-method	update_object-methods
update_object,featureInfoParametersTransformationPowerTransform-method	update_object-methods
update_object,list-method	update_object-methods
update_object,vimpTable-method	update_object-methods
vcov	vcov-methods
vcov,familiarModel-method	vcov-methods
vimpTable-class	vimpTable-class
waiver	waiver
