Representation for Glycan Compositions and Structures
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Documentation for package ‘glyrepr’ version 1.0.0
Help Pages
| as_glycan_composition | Convert to Glycan Composition |
| as_glycan_structure | Convert to Glycan Structure Vector |
| available_monosaccharides | Get Available Monosaacharides |
| available_substituents | Available Substituents |
| canonicalize_glycan_graph | Canonicalize a Glycan Graph |
| convert_to_generic | Convert Monosaccharides to Generic Type |
| convert_to_generic.character | Convert Monosaccharides to Generic Type |
| convert_to_generic.glyrepr_composition | Convert Monosaccharides to Generic Type |
| convert_to_generic.glyrepr_structure | Convert Monosaccharides to Generic Type |
| convert_to_generic.igraph | Convert Monosaccharides to Generic Type |
| count_mono | Get the Number of Monosaccharides |
| count_mono.glyrepr_composition | Get the Number of Monosaccharides |
| count_mono.glyrepr_structure | Get the Number of Monosaccharides |
| count_mono.igraph | Get the Number of Monosaccharides |
| enumerate_floating_graph_localizations | Enumerate Floating Graph Localizations |
| enumerate_floating_localizations | Enumerate Floating Localizations |
| fill_anomer_pos | Fill Anomer Positions |
| get_alditol | Get Alditol Status |
| get_anomer | Get the Anomeric information |
| get_anomer_pos | Infer Anomer Positions |
| get_mono_type | Get Monosaccharide Types |
| get_mono_type.character | Get Monosaccharide Types |
| get_mono_type.glyrepr_composition | Get Monosaccharide Types |
| get_mono_type.glyrepr_structure | Get Monosaccharide Types |
| get_mono_type.igraph | Get Monosaccharide Types |
| get_structure_graphs | Access Individual Glycan Structures |
| get_structure_level | Get the Structure Resolution Levels |
| glycan_composition | Create a Glycan Composition |
| glycan_structure | Create a Glycan Structure Vector |
| graph_to_iupac | Generate IUPAC-Condensed from a Glycan Graph |
| has_floating_parts | Detect Floating Glycan Parts |
| has_floating_substituents | Detect Floating Substituents |
| has_linkages | Determine if a Glycan Structure has Linkages |
| infer_anomer_pos | Infer Anomer Positions |
| is_glycan_composition | Create a Glycan Composition |
| is_glycan_structure | Create a Glycan Structure Vector |
| is_known_monosaccharide | Check if a Monosaccharide is Known |
| localize_floating_parts | Localize Floating Glycan Parts |
| new_glycan_structure | Construct a Glycan Structure Vector from Trusted Data |
| n_glycan_core | Example Glycan Structures |
| o_glycan_core_1 | Example Glycan Structures |
| o_glycan_core_2 | Example Glycan Structures |
| possible_linkages | Generate Possible Linkages |
| remove_linkages | Remove All Linkages from a Glycan |
| remove_substituents | Remove All Substituents from a Glycan |
| severy | Test Predicates on Glycan Structure Vectors |
| simap | Map Functions Over Glycan Structure Vectors with Indices |
| simap_chr | Map Functions Over Glycan Structure Vectors with Indices |
| simap_dbl | Map Functions Over Glycan Structure Vectors with Indices |
| simap_int | Map Functions Over Glycan Structure Vectors with Indices |
| simap_lgl | Map Functions Over Glycan Structure Vectors with Indices |
| simap_structure | Map Functions Over Glycan Structure Vectors with Indices |
| simap_vec | Map Functions Over Glycan Structure Vectors with Indices |
| smap | Map Functions Over Glycan Structure Vectors |
| smap2 | Map Functions Over Two Glycan Structure Vectors |
| smap2_chr | Map Functions Over Two Glycan Structure Vectors |
| smap2_dbl | Map Functions Over Two Glycan Structure Vectors |
| smap2_int | Map Functions Over Two Glycan Structure Vectors |
| smap2_lgl | Map Functions Over Two Glycan Structure Vectors |
| smap2_structure | Map Functions Over Two Glycan Structure Vectors |
| smap2_vec | Map Functions Over Two Glycan Structure Vectors |
| smap_chr | Map Functions Over Glycan Structure Vectors |
| smap_dbl | Map Functions Over Glycan Structure Vectors |
| smap_int | Map Functions Over Glycan Structure Vectors |
| smap_lgl | Map Functions Over Glycan Structure Vectors |
| smap_predicates | Test Predicates on Glycan Structure Vectors |
| smap_structure | Map Functions Over Glycan Structure Vectors |
| smap_unique | Apply Function to Unique Structures Only |
| smap_vec | Map Functions Over Glycan Structure Vectors |
| snone | Test Predicates on Glycan Structure Vectors |
| spmap | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_chr | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_dbl | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_int | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_lgl | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_structure | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| spmap_vec | Map Functions Over Glycan Structure Vectors and Multiple Arguments |
| ssome | Test Predicates on Glycan Structure Vectors |
| structure_candidate_edges | List Potential Virtual Edges for Floating Parts |
| structure_component_membership | Identify Main and Floating Structure Components |
| structure_edges | Convert Glycan Structures to Graph Tables |
| structure_floating_candidates | List Candidate Parents for Floating Metadata |
| structure_floating_parts | Convert Glycan Structures to Graph Tables |
| structure_floating_substituents | Convert Glycan Structures to Graph Tables |
| structure_from_tibbles | Convert Glycan Structures to Graph Tables |
| structure_nodes | Convert Glycan Structures to Graph Tables |
| structure_tables | Convert Glycan Structures to Graph Tables |
| structure_to_iupac | Convert Glycan Structure to IUPAC-like Sequence |
| validate_glycan_graph | Validate a Glycan Graph |
| validate_glycan_graph_vector | Validate a List of Glycan Graphs |
| valid_linkages | Check if Linkages are Valid |