Brain Atlas Data Structures for the 'ggsegverse' Ecosystem
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Documentation for package ‘ggseg.formats’ version 0.0.3
Help Pages
| aseg | FreeSurfer Automatic Subcortical Segmentation Atlas |
| as_brain_atlas | Coerce to ggseg atlas |
| as_ggseg_atlas | Coerce to ggseg atlas |
| as_polygon_atlas | Convert a ggseg atlas to the sf-optional polygon representation |
| as_sf_atlas | Rehydrate a ggseg atlas into sf-backed form |
| atlas_context_remove | Manipulate brain atlas regions and views |
| atlas_core_add | Manipulate brain atlas regions and views |
| atlas_geom | Get the raw 2D geometry of an atlas |
| atlas_geometry_type | Classify or test an atlas's 2D geometry |
| atlas_labels | Extract unique labels from an atlas |
| atlas_manipulation | Manipulate brain atlas regions and views |
| atlas_meshes | Get atlas meshes for 3D rendering |
| atlas_palette | Get atlas palette |
| atlas_polygons | Get atlas polygons for 2D rendering |
| atlas_regions | Extract unique region names from an atlas |
| atlas_region_contextual | Manipulate brain atlas regions and views |
| atlas_region_keep | Manipulate brain atlas regions and views |
| atlas_region_op | Manipulate brain atlas regions and views |
| atlas_region_remove | Manipulate brain atlas regions and views |
| atlas_region_rename | Manipulate brain atlas regions and views |
| atlas_sf | Get atlas data for 2D rendering |
| atlas_type | Detect atlas type |
| atlas_vertices | Get atlas vertices for 3D rendering |
| atlas_views | Get available views in atlas |
| atlas_view_gather | Manipulate brain atlas regions and views |
| atlas_view_keep | Manipulate brain atlas regions and views |
| atlas_view_remove | Manipulate brain atlas regions and views |
| atlas_view_remove_region | Manipulate brain atlas regions and views |
| atlas_view_remove_small | Manipulate brain atlas regions and views |
| atlas_view_reorder | Manipulate brain atlas regions and views |
| brain_atlas | Constructor for ggseg atlas |
| brain_data_cortical | Create cortical atlas data |
| brain_data_subcortical | Create subcortical atlas data |
| brain_data_tract | Create tract atlas data |
| brain_labels | Extract unique labels from an atlas |
| brain_regions | Extract unique region names from an atlas |
| brain_views | Get available views in atlas |
| convert_legacy_brain_atlas | Convert legacy ggseg atlases to ggseg_atlas format |
| dk | Desikan-Killiany Cortical Atlas |
| get_brain_mesh | Get brain surface mesh |
| get_cerebellar_mesh | Get SUIT cerebellar surface mesh |
| ggseg_atlas | Constructor for ggseg atlas |
| ggseg_data_cerebellar | Create cerebellar atlas data |
| ggseg_data_cortical | Create cortical atlas data |
| ggseg_data_subcortical | Create subcortical atlas data |
| ggseg_data_tract | Create tract atlas data |
| is_atlas_polygon | Classify or test an atlas's 2D geometry |
| is_atlas_sf | Classify or test an atlas's 2D geometry |
| is_brain_atlas | Check ggseg atlas class |
| is_cerebellar_atlas | Check ggseg atlas class |
| is_cortical_atlas | Check ggseg atlas class |
| is_ggseg3d_atlas | Check if object is a legacy ggseg3d atlas |
| is_ggseg_atlas | Check ggseg atlas class |
| is_subcortical_atlas | Check ggseg atlas class |
| is_tract_atlas | Check ggseg atlas class |
| migrate_atlas_files | Migrate atlas '.rda' files to the sf-optional polygon format |
| read_atlas_files | Read in atlas data from all subjects |
| read_freesurfer_stats | Read in raw FreeSurfer stats file |
| read_freesurfer_table | Read in stats table from FreeSurfer |
| suit | SUIT Cerebellar Lobular Atlas |
| tracula | TRACULA White Matter Tract Atlas |
| unify_legacy_atlases | Convert legacy ggseg atlases to ggseg_atlas format |