# Generated by roxygen2: do not edit by hand

S3method(cooks.distance,deconv)
S3method(plot,qqmap)
S3method(residuals,deconv)
S3method(rstandard,deconv)
S3method(rstudent,deconv)
S3method(summary,cellMarkers)
S3method(summary,tune_deconv)
export(add_noise)
export(adjust_library_size)
export(cellMarkers)
export(collapse_group)
export(comp_heatmap)
export(cos_similarity)
export(deconvolute)
export(diagnose)
export(fix_bulk)
export(fix_group)
export(gene2symbol)
export(gene_angle)
export(generate_samples)
export(ggplot_residuals)
export(graded_log_noise)
export(log_noise)
export(logmean)
export(mergeMarkers)
export(metric_set)
export(plot_comp)
export(plot_residuals)
export(plot_set)
export(plot_tune)
export(quantile_map)
export(rank_angle)
export(reduceNoise)
export(scapply)
export(scmean)
export(shift_noise)
export(signature_heatmap)
export(simulate_bulk)
export(slapply)
export(specificity_plot)
export(specificity_plotly)
export(spillover_heatmap)
export(sqrt_noise)
export(stack_ggplot)
export(stack_plot)
export(tune_deconv)
export(updateMarkers)
export(violin_plot)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,draw)
importFrom(ComplexHeatmap,pindex)
importFrom(DelayedArray,rowMeans)
importFrom(circlize,colorRamp2)
importFrom(dplyr,near)
importFrom(ensembldb,select)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_axis)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,mean_se)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,hcl.colors)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(grid,gpar)
importFrom(grid,grid.rect)
importFrom(grid,grid.text)
importFrom(grid,unit)
importFrom(gtools,rdirichlet)
importFrom(matrixStats,colMins)
importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowQuantiles)
importFrom(matrixStats,rowRanks)
importFrom(matrixStats,rowVars)
importFrom(mcprogress,cat_parallel)
importFrom(mcprogress,pmclapply)
importFrom(parallel,mclapply)
importFrom(pbmcapply,pbmclapply)
importFrom(rlang,.data)
importFrom(scales,hue_pal)
importFrom(splines,ns)
importFrom(stats,aggregate)
importFrom(stats,approxfun)
importFrom(stats,cooks.distance)
importFrom(stats,cor)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,lowess)
importFrom(stats,median)
importFrom(stats,optimise)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,rstandard)
importFrom(stats,rstudent)
importFrom(stats,runif)
importFrom(utils,stack)
