| transitiontrees::advanced-analysis | 4. Advanced analysis: smoothing, tuning, comparison, and mining | HTML | source | R code | |
| transitiontrees::analysis-case | 2. A complete analysis case: collaborative-regulation sequences | HTML | source | R code | |
| transitiontrees::ecosystem-compatibility | 3. Ecosystem compatibility: TraMineR, tna, and Nestimate | HTML | source | R code | |
| transitiontrees::getting-started | 1. Getting started: basic analysis and trajectory trees | HTML | source | R code | |
| transitiontrees::visualization | 5. Visualization: every plot, and how to read it | HTML | source | R code |