Analysis of Selection Index in Plant Breeding
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Documentation for package ‘selection.index’ version 2.0.0
Help Pages
| base_index | Base Index (Williams, 1962) |
| clgsi | Combined Linear Genomic Selection Index (CLGSI) |
| cppg_lgsi | Combined Predetermined Proportional Gains Linear Genomic Selection Index (CPPG-LGSI) |
| cpp_math_primitives | Generic C++ Math Primitives for Experimental Design Statistics |
| crlgsi | Combined Restricted Linear Genomic Selection Index (CRLGSI) |
| dg_lpsi | Desired Gains Index (DG-LPSI) |
| esim | Linear Phenotypic Eigen Selection Index (ESIM) |
| estimate_missing_values | Estimate Missing Values in Experimental Data |
| genetic_genomic_varcov | Genetic-Genomic Variance-Covariance Matrix (A) |
| genomic_varcov | Genomic Variance-Covariance Matrix (Gamma) |
| gen_advance | Genetic Advance for PRE |
| gen_varcov | Genotypic Variance-Covariance Analysis |
| gesim | Linear Genomic Eigen Selection Index Method (GESIM) |
| gw_esim | Genome-Wide Linear Eigen Selection Index Method (GW-ESIM) |
| gw_lmsi | Genome-Wide Linear Marker Selection Index (GW-LMSI) |
| haldane_mapping | Haldane's Mapping Function |
| inverse_haldane_mapping | Inverse Haldane Mapping Function |
| lgsi | Linear Genomic Selection Index (LGSI) |
| lmsi | Linear Marker Selection Index (LMSI) |
| lpsi | Combinatorial Linear Phenotypic Selection Index |
| maize_geno | Synthetic Maize Genomic Data |
| maize_pheno | Synthetic Maize Phenotypic Data |
| mean_performance | Mean performance of phenotypic data |
| mesim | Molecular Eigen Selection Index Method (MESIM) |
| missing-value | Missing Value Imputation for Experimental Designs |
| mlgsi | Multistage Linear Genomic Selection Index (MLGSI) |
| mlpsi | Multistage Linear Phenotypic Selection Index (MLPSI) |
| mppg_lgsi | Multistage Predetermined Proportional Gain Linear Genomic Selection Index (MPPG-LGSI) |
| mppg_lpsi | Multistage Predetermined Proportional Gain Linear Phenotypic Selection Index (MPPG-LPSI) |
| mrlgsi | Multistage Restricted Linear Genomic Selection Index (MRLGSI) |
| mrlpsi | Multistage Restricted Linear Phenotypic Selection Index (MRLPSI) |
| phenomic_genomic_varcov | Phenomic-Genomic Variance-Covariance Matrix (Phi) |
| phen_varcov | Phenotypic Variance-Covariance Analysis |
| plot.selection_simulation | Plot Method for Selection Simulation Results |
| ppg_esim | Predetermined Proportional Gain Eigen Selection Index (PPG-ESIM) |
| ppg_gesim | Predetermined Proportional Gain Genomic Eigen Selection Index (PPG-GESIM) |
| ppg_lgsi | Predetermined Proportional Gains Linear Genomic Selection Index (PPG-LGSI) |
| ppg_lpsi | Predetermined Proportional Gains (PPG-LPSI) |
| predict_selection_score | Predict selection index scores |
| print.base_index | Print method for Base Index |
| print.dg_lpsi | Print method for Desired Gains Index |
| print.esim | Print method for ESIM |
| print.gesim | Print method for GESIM |
| print.gw_esim | Print method for GW-ESIM |
| print.mesim | Print method for MESIM |
| print.ppg_esim | Print method for PPG-ESIM |
| print.ppg_gesim | Print method for PPG-GESIM |
| print.resim | Print method for RESIM |
| print.rgesim | Print method for RGESIM |
| print.selection_simulation | Print Method for Selection Simulation Results |
| print.smith_hazel | Print method for Smith-Hazel Index |
| resim | Restricted Linear Phenotypic Eigen Selection Index (RESIM) |
| rgesim | Restricted Linear Genomic Eigen Selection Index Method (RGESIM) |
| rlgsi | Restricted Linear Genomic Selection Index (RLGSI) |
| rlpsi | Restricted Linear Phenotypic Selection Index (RLPSI) |
| seldata | Selection Index DataSet |
| simulate_selection_cycles | Simulate Multi-Cycle Selection Using Different Indices |
| smith_hazel | Smith-Hazel Linear Phenotypic Selection Index |
| summary.base_index | Summary method for Base Index |
| summary.dg_lpsi | Summary method for Desired Gains Index |
| summary.esim | Summary method for ESIM |
| summary.gesim | Summary method for GESIM |
| summary.gw_esim | Summary method for GW-ESIM |
| summary.mesim | Summary method for MESIM |
| summary.ppg_esim | Summary method for PPG-ESIM |
| summary.ppg_gesim | Summary method for PPG-GESIM |
| summary.resim | Summary method for RESIM |
| summary.rgesim | Summary method for RGESIM |
| summary.selection_simulation | Summary Method for Selection Simulation Results |
| summary.smith_hazel | Summary method for Smith-Hazel Index |
| weight | Weight dataset |
| weight_mat | Convert dataframe to matrix |