useDynLib(spatialreg)

import(spData)

importFrom("stats", "lm.fit", "as.formula", "coef", "lm", "model.extract",
             "model.matrix", "na.fail", "napredict", "pnorm",
             "printCoefmat", "quantile", "residuals", "terms", 
	     "coefficients", "deviance", "nlminb", "optim",
             "pchisq", "summary.lm", "var", "logLik", "optimHess",
             "gaussian", "glm.fit", "model.offset", "model.weights",
             "rnorm", "sd", "predict", "AIC", "nlm", "optimize",
             "dbeta", "rchisq", "runif", "spline", "fitted", "formula",
             "model.response", "anova", "delete.response", "fitted.values",
             "model.frame")

importFrom("spdep", "is.symmetric.glist", "lag.listw", "card",
 "nb2listw", "n.comp.nb", "listw2U", "listw2mat", "Szero", "listw2sn",
 "mat2listw", "is.symmetric.nb", "chkIDs", "get.spChkOption",
 "subset.listw", "spweights.constants", "have_factor_preds_mf",
 "warn_factor_preds")

import(Matrix#, except=c("expm")
)
import(sf)
#importFrom(expm, expAtv, expm)
importFrom(coda, as.mcmc, HPDinterval)
importFrom(MASS, mvrnorm)
importFrom(boot, boot)
importFrom("methods", "new", "is", "slot", "as")
importFrom("graphics", "plot")
importFrom(splines, interpSpline)
importFrom(LearnBayes, rwmetrop)
importFrom(nlme, fdHess)
importFrom(multcomp, glht)
importFrom("utils", "packageVersion")

##################
# ML SE
export(errorsarlm, lagsarlm, sacsarlm)
export(trW, impacts, intImpacts)
export(bptest.Sarlm, LR.Sarlm, LR1.Sarlm, Wald1.Sarlm, Hausman.test)

S3method(print, Sarlm)
S3method(summary, Sarlm)
S3method(residuals, Sarlm)
S3method(deviance, Sarlm)
S3method(coef, Sarlm)
S3method(vcov, Sarlm)
S3method(fitted, Sarlm)
S3method(logLik, Sarlm)
S3method(anova, Sarlm)
S3method(predict, Sarlm)
S3method(impacts, Sarlm)
S3method(Hausman.test, Sarlm)
S3method(MCMCsamp, Sarlm)

S3method(print, summary.Sarlm)
S3method(coef, summary.Sarlm)

S3method(print, Sarlm.pred)
S3method(as.data.frame, Sarlm.pred)

# ML SAR/CAR/SMA
export(spautolm, LR1.Spautolm)

S3method(MCMCsamp, Spautolm)
S3method(residuals, Spautolm)
S3method(deviance, Spautolm)
S3method(coef, Spautolm)
S3method(fitted, Spautolm)
S3method(print, Spautolm)
S3method(summary, Spautolm)
S3method(logLik, Spautolm)

S3method(print, summary.Spautolm)
S3method(coef, summary.Spautolm)

# GMM SE
export(stsls)

S3method(residuals, Stsls) 
S3method(deviance, Stsls) 
S3method(coef, Stsls) 
S3method(print, Stsls) 
S3method(summary, Stsls) 
S3method(impacts, Stsls) 

S3method(print, summary.Stsls) 
S3method(coef, summary.Stsls) 

export(GMerrorsar, gstsls, GMargminImage)

S3method(residuals, Gmsar)
S3method(deviance, Gmsar)
S3method(coef, Gmsar)
S3method(fitted, Gmsar)
S3method(print, Gmsar)
S3method(summary, Gmsar)
S3method(Hausman.test, Gmsar)
S3method(impacts, Gmsar)

S3method(coef, summary.Gmsar)
S3method(print, summary.Gmsar)

# ML MESS
export(lagmess, LR1.Lagmess)

S3method(print, Lagmess)
S3method(summary, Lagmess)
S3method(print, summary.Lagmess)
S3method(residuals, Lagmess)
S3method(deviance, Lagmess)
S3method(coef, Lagmess)
S3method(coef, summary.Lagmess)
S3method(fitted, Lagmess)
S3method(logLik, Lagmess)
S3method(impacts, Lagmess)

# MCMC SET
export(spBreg_lag, spBreg_err, spBreg_sac)

S3method(impacts, MCMC_sar_G)
S3method(impacts, MCMC_sem_G)
S3method(impacts, MCMC_sac_G)

# SLX
export(lmSLX, create_WX)

S3method(impacts, SlX)
S3method(predict, SlX)
S3method(print, SlX)
S3method(summary, SlX)
S3method(print, summary.SlX)

# SF/ME
export(SpatialFiltering, ME)

S3method(fitted, SfResult)
S3method(print, SfResult)
S3method(fitted, Me_res)
S3method(print, Me_res)

# Impacts

S3method(print, LagImpact)
S3method(plot, LagImpact)
S3method(summary, LagImpact)
S3method(HPDinterval, LagImpact)
S3method(print, summary.LagImpact)

S3method(print, WXimpact)
S3method(summary, WXimpact)
S3method(print, summary.WXimpact)

exportMethods(coerce)

export(as_dgRMatrix_listw, as_dsTMatrix_listw, as_dsCMatrix_I,
	as_dsCMatrix_IrW, Jacobian_W, listw2U_Matrix)

export(powerWeights, invIrW, invIrM)

export(as.spam.listw, listw2U_spam)

export(lextrB, lextrW, lextrS, l_max)

export(griffith_sone, subgraph_eigenw)

export(mom_calc, mom_calc_int2)

export(MCMCsamp)

export(eigenw, jacobianSetup, can.be.simmed, similar.listw)

export(do_ldet, eigen_setup, mcdet_setup, cheb_setup, spam_setup,
        Matrix_setup, LU_setup, Matrix_J_setup, spam_update_setup,
        moments_setup, SE_classic_setup, SE_whichMin_setup, SE_interp_setup,
        LU_prepermutate_setup, eigen_pre_setup)

export(set.mcOption, get.mcOption, set.coresOption, get.coresOption,
        set.ClusterOption, get.ClusterOption)

export(set.VerboseOption, get.VerboseOption, set.ZeroPolicyOption, 
        get.ZeroPolicyOption)

export(aple.plot, localAple, aple, aple.mc)


