Fitting Predictive Microbiology Models

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Documentation for package ‘predmicror’ version 1.3.2

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

accuracy_factor	Bias and accuracy factors
AIC.predmicror_fit	Methods for 'predmicror_fit' objects
AIC.predmicror_omnibus_fit	Methods for omnibus fits
as.data.frame.predmicror_fit	Extract fitted values and residuals from a predmicror fit
aw	Data of aw
BaranyiFM	Baranyi and Roberts full growth model
BaranyiRM	Baranyi and Roberts reduced growth model
bias_factor	Bias and accuracy factors
BIC.predmicror_fit	Methods for 'predmicror_fit' objects
BIC.predmicror_omnibus_fit	Methods for omnibus fits
bixina	Data concerning _Staphylococcus aureus_ microbial inactivation in beef
BuchananRM	Buchanan reduced growth model
CMAW	Cardinal model for water activity
CMInh	Cardinal model for growth inhibitors
CMPH	Cardinal model for pH
CMTI	Cardinal model for temperature
coef.predmicror_fit	Methods for 'predmicror_fit' objects
coef.predmicror_omnibus_fit	Methods for omnibus fits
compare_models	Compare fitted predmicror models
dynamic_profile	Create a dynamic environmental profile
dynamic_sensitivity	Finite-difference sensitivity for dynamic predictions
FangNLM	Fang no lag growth model
fitted.predmicror_fit	Methods for 'predmicror_fit' objects
fitted.predmicror_omnibus_fit	Methods for omnibus fits
fit_cardinal	Fit a cardinal parameter model
fit_dynamic_growth	Fit dynamic microbial growth models
fit_dynamic_inactivation	Fit dynamic microbial inactivation models
fit_growth	Fit a primary growth model
fit_inactivation	Fit a microbial inactivation model
fit_metrics	Calculate model diagnostics for a fitted predmicror model
fit_metrics.default	Calculate model diagnostics for a fitted predmicror model
fit_metrics.predmicror_fit	Calculate model diagnostics for a fitted predmicror model
fit_omnibus	Fit omnibus predictive microbiology models
fit_omnibus_growth	Fit omnibus predictive microbiology models
fit_omnibus_inactivation	Fit omnibus predictive microbiology models
GeeraerdST	Geeraerd inactivation model
growthfull	Data of a complete curve of microbial growth
growthnolag	Data of a no lag curve of microbial growth
growthred	Data of a reduced curve of microbial growth
HuangFM	Huang full growth model
HuangNLM	Huang no lag growth model
HuangRGS	Huang reparameterized Gompertz survival model
HuangRM	Huang reduced growth model
inh	Data of INH antimicrobials
logLik.predmicror_fit	Methods for 'predmicror_fit' objects
logLik.predmicror_omnibus_fit	Methods for omnibus fits
mafart2005Li11	Data of microbial inactivation Albert and Mafart (2005)
omnibus_secondary	Define an omnibus secondary model
ph	Data pH
plot.predmicror_fit	Methods for 'predmicror_fit' objects
predict.predmicror_fit	Methods for 'predmicror_fit' objects
predict.predmicror_omnibus_fit	Methods for omnibus fits
predict_dynamic_growth	Predict microbial growth under dynamic environmental conditions
predict_dynamic_inactivation	Predict microbial inactivation under dynamic environmental conditions
predmicror_assistant	Assistant for predmicror
predmicror_assistant_app	Launch the predmicror assistant Shiny app
predmicror_augment	Extract fitted values and residuals from a predmicror fit
predmicror_augment.default	Extract fitted values and residuals from a predmicror fit
predmicror_augment.predmicror_fit	Extract fitted values and residuals from a predmicror fit
predmicror_fit_methods	Methods for 'predmicror_fit' objects
predmicror_models	List models available through the fitting wrappers
predmicror_omnibus_methods	Methods for omnibus fits
print.predmicror_fit	Methods for 'predmicror_fit' objects
print.predmicror_omnibus_fit	Methods for omnibus fits
residuals.predmicror_fit	Methods for 'predmicror_fit' objects
residuals.predmicror_omnibus_fit	Methods for omnibus fits
RichardsNLM	Richards no lag growth model
RossoFM	Rosso full growth model
salmonella	Potential growth of _Salmonella typhimurium_ on cooked chicken
summary.predmicror_fit	Methods for 'predmicror_fit' objects
summary.predmicror_omnibus_fit	Methods for omnibus fits
validate_omnibus_leave_one_out	Validate an omnibus fit by leaving out one group
vcov.predmicror_fit	Methods for 'predmicror_fit' objects
WeibullM	Weibull inactivation model Mafart
WeibullMM	Weibull inactivation modified model Mafart
WeibullPH	Weibull inactivation model Peleg and Huang
ZwieteringFM	Zwietering full growth model