are_tmhs                Are the sequences transmembrance helices?
check_pureseqtm_installation
                        Checks the installation of PureseqTM. Throws a
                        helpful error message if incomplete, else does
                        nothing
check_topology          Check if the topology is valid.
create_pureseqtm_files
                        Create the five PureseqTM output files, by
                        running PureseqTM.
create_pureseqtm_proteome_file
                        Create the output file of a PureseqTM proteome
                        run
default_params_doc      This function does nothing. It is intended to
                        inherit is parameters' documentation.
get_default_pureseqtm_folder
                        Get the path to the folder where this package
                        installs PureseqTM by default
get_example_filename    Get the full path to a PureseqTM example file.
get_example_filenames   Get the full path to all PureseqTM example
                        files
get_pureseqtm_url       Get the URL of the PureseqTM source code
get_pureseqtm_version   Get the PureseqTM version
install_pureseqtm       Install PureseqTM to a local folder
is_on_appveyor          Determines if the environment is AppVeyor
is_on_ci                Determines if the environment is a continuous
                        integration service
is_on_travis            Determines if the environment is Travis CI
is_protein_name_line    Is the line of text the name of a protein, as
                        used within a FASTA filename?
is_pureseqtm_installed
                        Measure if PureseqTM is installed locally
is_tmh                  Determine if the protein sequence contains at
                        least one transmembrane helix.
is_topology_line        Is the line of text the topology, as used
                        within a FASTA filename?
plot_topology           Plot the topology
predict_topology        Predict the topology of a proteome
predict_topology_from_sequence
                        Run PureseqTM directy on a protein sequence
pureseqtmr              pureseqtmr: estimate the topoplogy of membrane
                        proteins
pureseqtmr_report       Create a pureseqtmr report, to be used when
                        reporting bugs
run_pureseqtm_proteome
                        Run PureseqTM on a proteome
tally_tmhs              Count the number of transmembrane helices in a
                        topology
uninstall_pureseqtm     Uninstall PureseqTM
