EBIquery_allTerm        EBIquery_allTerm
apiAdmin_ping           Heartbeat to check GTEx API server
                        connectivity.
apiEbi_ping             Heartbeat to check EBI API server connectivity.
dbsnpQueryRange         retrieve snps from dbSNP using coordinate.
extractGeneInfo         extract gene infor of specified genome from
                        gencodeGeneInfoAllGranges
fetchContent            Fetch data using url by three methods
fetchContentEbi         Fetch records from
is.wholenumber          determine whether is a whole number:
retrieveLD              Retrive SNP pairwise LD from locuscompare
                        database.
xQTLanalyze_TSExp       Perform tissue-specific expression analysis for
                        genes.
xQTLanalyze_coloc       Conduct colocalization analysis with trait
                        genes generated from 'xQTLanalyze_getTraits'
xQTLanalyze_getSentinelSnp
                        Detect sentinel SNPs in a given summary
                        statistis dataset.
xQTLanalyze_getTraits   Identify trait genes using sentinel SNPs
                        generated from 'xQTLanalyze_getSentinelSnp'
xQTLanalyze_propensity
                        eQTL-specific analysis
xQTLdownload_egene      Download details of eGenes (eQTL Genes) for a
                        specified gene or a tissue.
xQTLdownload_eqtl       Download significant or unsignificant eQTL
                        associations of a tissue or across all tissues
xQTLdownload_eqtlAllAsso
                        Download summary statistics of eQTL of a
                        specified gene, variant, tissue or study.
xQTLdownload_eqtlAllAssoPos
                        Download summary statistics of eQTL with genome
                        position.
xQTLdownload_eqtlExp    Download normalized expression of gene for a
                        eQTL pair.
xQTLdownload_eqtlSig    Download significant eQTL associations of a
                        specified tissue or across all tissues.
xQTLdownload_exp        Download normalized gene expression at the
                        sample level in a specified tissue.
xQTLdownload_geneMedExp
                        Download median expression of all samples for
                        specified genes across tissues.
xQTLdownload_sgene      Download details of sGenes (sQTL Genes) for a
                        specified gene or a tissue.
xQTLdownload_sqtlExp    Download normalized expression of intron for a
                        sQTL pair.
xQTLdownload_sqtlSig    Download significant sQTL associations of a
                        tissue or across all tissues
xQTLquery_gene          Query basic information (including name,
                        symbol, position and description, etc. ) of
                        genes.
xQTLquery_geneAll       Fetch details of all genes supported in GTEx.
xQTLquery_sampleBySampleId
                        Query sample's details with samples' IDs.
xQTLquery_sampleByTissue
                        Query sample's details with tissue name
xQTLquery_tissue        Fetch all details of a specified tissue or all
                        tissues
xQTLquery_varId         Query variant in GTEx with variant ID or dbSNP
                        ID
xQTLquery_varPos        Query varints in GTEx using genome position.
xQTLvisual_eqtl         Box plot with jittered points for showing
                        number and significance of eQTL associations
xQTLvisual_eqtlExp      Boxplot of normalized expression among
                        genotypes for eQTL.
xQTLvisual_geneExpTissues
                        Violin plot of distribution of the gene
                        expression profiles among multiple tissues.
xQTLvisual_genesExp     Density plot of expression profiles of the gene
xQTLvisual_locusCombine
                        Generate a combined figure including locuszoom
                        and locuscompare plot object.
xQTLvisual_locusCompare
                        Dotplot of comparing regional signals between
                        GWAS and xQTL.
xQTLvisual_locusZoom    Locuszoom plot for visualizing regional signals
                        relative to genomic position with a file of
                        summary statistics
xQTLvisual_qtlPropensity
                        Visualization of QTL specificity among multiple
                        cells/tissues.
xQTLvisual_sqtlExp      Boxplot of normalized expression among
                        genotypes for sQTL.
