CalcuSCIR               Calculate SCIntRuler
FindCell                Find cells indicating shared biological
                        features across conditions
FindNNDist              Find the nearest neighbors
FindNNDistC             Find the nearest neighbors
GetCluster              Get broad and fine clusters
NormData                Normalized RNA data matrix
PermTest                Permutation Test
PlotSCIR                Plot SCIntRuler
SCEtoSeurat             Input and Split SingleCellExperiment Data
SCIntRuler-package      SCIntRuler: Integration of Single-Cell RNA-seq
                        Datasets
SummCluster             Get maximum number of broad clusters
crossdist               Cross-Distance Matrix Calculation
sim_data_sce            My Example Dataset
sim_result              My Example Dataset
