Package: AMR
Version: 3.0.1
Date: 2025-09-20
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
  data analysis and to work with microbial and antimicrobial properties by
  using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
Authors@R: c(
  person(given = c("Matthijs", "S."),               family = "Berends",     role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7620-1800"), email = "m.s.berends@umcg.nl"),
  person(given = c("Dennis"),                       family = "Souverein",   role = c("aut", "ctb"), comment = c(ORCID = "0000-0003-0455-0336")),
  person(given = c("Erwin", "E.", "A."),            family = "Hassing",     role = c("aut", "ctb")),
  person(given = c("Aislinn"),                      family = "Cook",        role = "ctb", comment = c(ORCID = "0000-0002-9189-7815")),
  person(given = c("Andrew", "P."),                 family = "Norgan",      role = "ctb", comment = c(ORCID = "0000-0002-2955-2066")),
  person(given = c("Anita"),                        family = "Williams",    role = "ctb", comment = c(ORCID = "0000-0002-5295-8451")),
  person(given = c("Annick"),                       family = "Lenglet",     role = "ctb", comment = c(ORCID = "0000-0003-2013-8405")),
  person(given = c("Anthony"),                      family = "Underwood",   role = "ctb", comment = c(ORCID = "0000-0002-8547-4277")),
  person(given = c("Anton"),                        family = "Mymrikov",    role = "ctb"),
  person(given = c("Bart", "C."),                   family = "Meijer",      role = "ctb"),
  person(given = c("Christian", "F."),              family = "Luz",         role = "ctb", comment = c(ORCID = "0000-0001-5809-5995")),
  person(given = c("Dmytro"),                       family = "Mykhailenko", role = "ctb"),
  person(given = c("Eric", "H.", "L.", "C.", "M."), family = "Hazenberg",   role = "ctb"),
  person(given = c("Gwen"),                         family = "Knight",      role = "ctb", comment = c(ORCID = "0000-0002-7263-9896")),
  person(given = c("Jane"),                         family = "Hawkey",      role = "ctb", comment = c(ORCID = "0000-0001-9661-5293")),
  person(given = c("Jason"),                        family = "Stull",       role = "ctb", comment = c(ORCID = "0000-0002-9028-8153")),
  person(given = c("Javier"),                       family = "Sanchez",     role = "ctb", comment = c(ORCID = "0000-0003-2605-8094")),
  person(given = c("Jonas"),                        family = "Salm",        role = "ctb"),
  person(given = c("Judith", "M."),                 family = "Fonville",    role = "ctb"),
  person(given = c("Kathryn"),                      family = "Holt",        role = "ctb", comment = c(ORCID = "0000-0003-3949-2471")),
  person(given = c("Larisse"),                      family = "Bolton",      role = "ctb", comment = c(ORCID = "0000-0001-7879-2173")),
  person(given = c("Matthew"),                      family = "Saab",        role = "ctb"),
  person(given = c("Natacha"),                      family = "Couto",       role = "ctb", comment = c(ORCID = "0000-0002-9152-5464")),
  person(given = c("Peter"),                        family = "Dutey-Magni", role = "ctb", comment = c(ORCID = "0000-0002-8942-9836")),
  person(given = c("Rogier", "P."),                 family = "Schade",      role = "ctb"),
  person(given = c("Sofia"),                        family = "Ny",          role = "ctb", comment = c(ORCID = "0000-0002-2017-1363")),
  person(given = c("Alex", "W."),                   family = "Friedrich",   role = "ths", comment = c(ORCID = "0000-0003-4881-038X")),
  person(given = c("Bhanu", "N.", "M."),            family = "Sinha",       role = "ths", comment = c(ORCID = "0000-0003-1634-0010")),
  person(given = c("Casper", "J."),                 family = "Albers",      role = "ths", comment = c(ORCID = "0000-0002-9213-6743")),
  person(given = c("Corinna"),                      family = "Glasner",     role = "ths", comment = c(ORCID = "0000-0003-1241-1328")))
Depends: R (>= 3.0.0)
Suggests: cleaner, cli, crayon, curl, data.table, dplyr, ggplot2,
        knitr, openxlsx, parallelly, pillar, progress, readxl, recipes,
        rlang, rmarkdown, rstudioapi, rvest, skimr, testthat, tibble,
        tidymodels, tidyselect, tinytest, vctrs, xml2
VignetteBuilder: knitr,rmarkdown
URL: https://amr-for-r.org, https://github.com/msberends/AMR
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2025-09-20 10:56:39 UTC; m.s.berends
Author: Matthijs S. Berends [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7620-1800>),
  Dennis Souverein [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-0455-0336>),
  Erwin E. A. Hassing [aut, ctb],
  Aislinn Cook [ctb] (ORCID: <https://orcid.org/0000-0002-9189-7815>),
  Andrew P. Norgan [ctb] (ORCID: <https://orcid.org/0000-0002-2955-2066>),
  Anita Williams [ctb] (ORCID: <https://orcid.org/0000-0002-5295-8451>),
  Annick Lenglet [ctb] (ORCID: <https://orcid.org/0000-0003-2013-8405>),
  Anthony Underwood [ctb] (ORCID:
    <https://orcid.org/0000-0002-8547-4277>),
  Anton Mymrikov [ctb],
  Bart C. Meijer [ctb],
  Christian F. Luz [ctb] (ORCID: <https://orcid.org/0000-0001-5809-5995>),
  Dmytro Mykhailenko [ctb],
  Eric H. L. C. M. Hazenberg [ctb],
  Gwen Knight [ctb] (ORCID: <https://orcid.org/0000-0002-7263-9896>),
  Jane Hawkey [ctb] (ORCID: <https://orcid.org/0000-0001-9661-5293>),
  Jason Stull [ctb] (ORCID: <https://orcid.org/0000-0002-9028-8153>),
  Javier Sanchez [ctb] (ORCID: <https://orcid.org/0000-0003-2605-8094>),
  Jonas Salm [ctb],
  Judith M. Fonville [ctb],
  Kathryn Holt [ctb] (ORCID: <https://orcid.org/0000-0003-3949-2471>),
  Larisse Bolton [ctb] (ORCID: <https://orcid.org/0000-0001-7879-2173>),
  Matthew Saab [ctb],
  Natacha Couto [ctb] (ORCID: <https://orcid.org/0000-0002-9152-5464>),
  Peter Dutey-Magni [ctb] (ORCID:
    <https://orcid.org/0000-0002-8942-9836>),
  Rogier P. Schade [ctb],
  Sofia Ny [ctb] (ORCID: <https://orcid.org/0000-0002-2017-1363>),
  Alex W. Friedrich [ths] (ORCID:
    <https://orcid.org/0000-0003-4881-038X>),
  Bhanu N. M. Sinha [ths] (ORCID:
    <https://orcid.org/0000-0003-1634-0010>),
  Casper J. Albers [ths] (ORCID: <https://orcid.org/0000-0002-9213-6743>),
  Corinna Glasner [ths] (ORCID: <https://orcid.org/0000-0003-1241-1328>)
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Repository: CRAN
Date/Publication: 2025-09-20 11:40:03 UTC
Built: R 4.4.3; ; 2026-02-25 01:57:51 UTC; windows
