CD_FINNGEN              Finngen r7 Crohn‘s disease (K11_CROHNS)
CD_UKBB                 UKBB Crohns disease (ICD 10 code K50)
R2_CD_UKBB              Example dataset including the R2 column for the
                        locuszoom plot function
UC_UKBB                 UKBB Ulcerative colitis (ICD 10 code K51)
annotate_with_nearest_gene
                        Get the nearest gene for one or more snps
create_snpset           Create a dataframe that can be used as input
                        for making effect plots
create_snpset_code      Show the code/functions used to create a snpset
effect_plot             Create a plot comparing effects within two
                        datasets
effectplot              Create a plot comparing variant effects in two
                        datasets
flip_to_positive_allele_for_dat1
                        Flip to the positive allele for dataset 1
get_best_snp_per_MB     Get the index/lead variants
get_gene                Get the genetic position of a gene by gene name
get_gene_coords         Get the genetic position of a gene by gene name
get_genes_by_Gene_Symbol
                        Get the genetic position of a gene by its gene
                        name
get_genes_in_region     Get SNPs/variants within region
get_lead_snps           Get the index/lead variants
get_overlapping_snps_by_pos
                        Get variants that overlap between two datasets
get_sign_and_sugg_loci
                        Get the index/lead variants
get_snps_within_region
                        Get SNPs/variants within region
get_snpset              Create a dataframe that can be used as input
                        for making effect plots
get_snpset_code         Show the code/functions used to get a snpset
get_top_snp             Get the top hit from the dataframe
get_topr_colors         Get the top hit from the dataframe
locuszoom               Create a locuszoom-like plot
manhattan               Create a Manhattan plot
manhattanExtra          Create a Manhattan plot highlighting
                        genome-wide significant and suggestive loci
match_alleles           Match the variants in the snpset by their
                        alleles
match_by_alleles        Match the variants in the snpset by their
                        alleles
match_by_pos            Get variants that overlap between two datasets
qqtopr                  Create a quantile quantile (QQ) plot
regionplot              Create a regionplot
topr                    topr
