# An Experiment Interface for 'DeepSqueak' Bioacoustics Research

## Documentation for package ‘SqueakR’ version 1.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_timepoint_data | Add Timepoint Data
add_to_experiment | Add Scored Data to Experiment Object
analyze_factor | Analyze Factor
autosqueakRpipeline | Fully-Automatic Experiment Creation
create_experiment | Create New Experiment
deepsqueak_data | DeepSqueak Example Data
describe_experiment | Describe Experiment
plotClusters | 3D Call Clusters (Custom Label) Plot
plotContours | 2D Call Contours
plotCorrelations | Plot Correlation Matrix
plotDeltaHistogram | Plot Delta Frequency Histogram
plotDensitySplitByCustom | Plot Density Graph, Splitting Groups by Custom Label
plotDensitySplitByDuration | Plot Density Graph, Splitting Groups by Duration
plotDensitySplitByFrequency | Plot Density Graph, Splitting Groups by Frequency
plotDensityStackedByCustom | Plot Density Graph Stacked by Custom Labels
plotDensityStackedByDuration | Plot Density Graph Stacked by Duration
plotDensityStackedByFrequency | Plot Density Graph Stacked by Frequency
plotEthnogram | Plot Ethnogram
plotEthnogramSplitByTonality | Plot Tonality-colored Ethnogram
plotPrincipalBoxplot | Plot Principal Frequency Box-Plot
plotSummaryPDF | Export PDF
plotSunburstAnimals | Sunburst Plot for Animal Distribution
plotSunburstExperimenters | Sunburst Plot for Experimenter Distribution
plotSurface | 3D Surface Plot for Call Datasets
remove_experiment_data | Remove Data from Experiment File
save_experiment | Save Experiment Locally
score_timepoint_data | Score Timepoint Data
semisqueakRpipeline | Semi-Automatic Experiment Creation
squeakrANOVA | Generate ANOVA tables for Detected Calls
squeakRDashboard | Launch SqueakR Dashboard
squeakrSummary | Summary Statistics for Experiment
unblind_all_ids | Decode Experiment IDs
unblind_data_id | Find Matching Experiment ID
unblind_data_name | Find Matching Experiment Name
update_experiment | Updates Experiment Object Metadata