# Estimate Structured Additive Regression Models with 'BayesX'

## Documentation for package ‘R2BayesX’ version 1.1-6

- DESCRIPTION file
- Code demos. Use demo() to run them.

## Help Pages

R2BayesX-package | Estimate STAR Models with BayesX
r2bayesx-package | Estimate STAR Models with BayesX
add.neighbor | Add Neighborhood Relations
bayesx | Estimate STAR Models with BayesX
bayesx.construct | Construct BayesX Model Term Objects
bayesx.construct.bl.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.factor.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.gk.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.gs.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.kr.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.lasso.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.mrf.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.nigmix.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.ps.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.ra.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.re.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.ridge.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.rw1.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.rw2.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.season.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.t2.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.te.smooth.construct | Construct BayesX Model Term Objects
bayesx.construct.tensor.smooth.construct | Construct BayesX Model Term Objects
bayesx.control | Control Parameters for BayesX
bayesx.term.options | Show BayesX Term Options
bayesx_logfile | BayesX Log-Files
bayesx_prgfile | BayesX Program-Files
bayesx_runtime | BayesX Program-Runtimes
BeechBnd | Beech Location Map
BeechGra | Beech Neighborhood Information
bnd2gra | Convert Boundary Format to Graph Format
bnd2sp | Convert sp and bnd format into each other
bxopts | Show BayesX Term Options
colorlegend | Plot a Color Legend
cprob | Extract Contour Probabilities
delete.neighbor | Delete Neighborhood Relations
DIC | Deviance Information Criterion
DIC.bayesx | Deviance Information Criterion
drawmap | Plot Maps
FantasyBnd | Fantasy Map
fitted.bayesx | Extract BayesX Fitted Values and Residuals
forest | Forest Health Data
ForestHealth | Forest Health Data
GAMart | GAM Artificial Data Set
gamart | GAM Artificial Data Set
GCV | Gerneralized Cross Validation Criterion
GCV.bayesx | Gerneralized Cross Validation Criterion
GermanyBnd | Germany Map
get.neighbor | Obtain Neighbors of Given Regions
getscript | Generate an executable R fitted model script
gra2nb | Convert nb and gra format into each other
GRstats | Compute Gelman and Rubin's convergence diagnostics from multicore BayesX models.
logfile | BayesX Log-Files
MunichBnd | Munich Map
nb2gra | Convert nb and gra format into each other
parse.bayesx.input | Parse BayesX Input
plot.bayesx | Default BayesX Plotting
plot.bnd | Plot Maps
plot2d | 2D Effect Plot
plot3d | 3D Effect Plot
plotblock | Factor Variable and Random Effects Plots
plotmap | Plot Maps
plotnonp | 2D Effect Plot
plotsamples | Plot Sampling Path(s) of Coefficient(s) and Variance(s)
plotsurf | 3D Effect Plot
predict.bayesx | Prediction from fitted BayesX objects
prgfile | BayesX Program-Files
R2BayesX | Estimate STAR Models with BayesX
r2bayesx | Estimate STAR Models with BayesX
read.bayesx.output | Read BayesX Output from Directories
read.bnd | Read Geographical Information in Boundary Format
read.gra | Read Geographical Information in Graph Format
residuals.bayesx | Extract BayesX Fitted Values and Residuals
runtime | BayesX Program-Runtimes
samples | Extract Samples of Coefficients and Variances
shp2bnd | convert a shape-file into a boundary object
sliceplot | Plot Slices of Bivariate Functions
sp2bnd | Convert sp and bnd format into each other
summary.bayesx | Bayesx Summary Statistics
sx | Construct BayesX Model Terms in A Formula
term.freqs | Extract model term selection frequencies.
write.bayesx.input | Write the BayesX Program
write.bnd | Saving Maps in Boundary Format
write.gra | Saving Maps in Graph Format
zambia | Determinants of Childhood Malnutrition in Zambia
ZambiaBnd | Zambia Map
ZambiaNutrition | Determinants of Childhood Malnutrition in Zambia