Package: Grouphmap
Type: Package
Title: 'Grouphmap' is an Automated One-Step Common Analysis of Batch
        Expression Profile
Version: 1.0.0
Authors@R: person("Yuchen", "Sun", role = c("aut", "cre"),email = "yuchensun2436@163.com")
Author: Yuchen Sun [aut, cre]
Maintainer: Yuchen Sun <yuchensun2436@163.com>
Depends: R (>= 4.2.0)
Description: The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.
License: Artistic-2.0
Encoding: UTF-8
Imports: limma, clusterProfiler, dplyr, org.Mm.eg.db, pheatmap,
        stringr, stats, utils, grDevices
RoxygenNote: 7.2.3
References: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu ,
        Charity W Law , Wei Shi , Gordon K Smyth (2015)
        <doi:10.1093/nar/gkv007>; Guangchuang Yu, Li-Gen Wang, Yanyan
        Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>
NeedsCompilation: no
Packaged: 2023-09-04 02:24:10 UTC; yuchensun
Repository: CRAN
Date/Publication: 2023-09-04 09:50:02 UTC
Built: R 4.4.3; ; 2026-02-13 04:50:42 UTC; windows
