Package: oCELLoc
Title: Predicts Suitable Cell Types in Spatial Transcriptomics and
        scRNA-seq Data
Version: 1.0.0
Authors@R: c(
  person(given = "Afeefa",
                  family = "Zainab",
                  email = "afeeffazainab@gmail.com",
                  role = c("aut", "cre"),
                  comment = c(ORCID = "0000-0003-3357-8661")),
          person("Vladyslav", "Honcharuk",
                 email = "vladyslav.s.honcharuk@gmail.com",
                 role = "aut",
                 comment = c(ORCID = "0000-0002-7464-500X")),
          person("Alexis", "Vandenbon",
                 email = "alexisvdb@infront.kyoto-u.ac.jp",
                 role = "aut",
                 comment = c(ORCID = "0000-0003-2180-5732")))
Description: Picks the suitable cell types in spatial and scRNA-seq data using shrinkage methods.
    The package includes curated reference gene expression profiles for human and mouse cell types, 
    facilitating immediate application to common spatial transcriptomics or scRNA datasets. 
    Additionally, users can input custom reference data to support tissue- or experiment-specific analyses.
License: MIT + file LICENSE
URL: https://doi.org/10.64898/2025.12.11.693812
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: glmnet, utils, stats, ggplot2, rlang, reshape2,
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
LazyData: true
Depends: R (>= 3.5.0)
NeedsCompilation: no
Packaged: 2025-12-17 06:14:28 UTC; vlaruks
Author: Afeefa Zainab [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3357-8661>),
  Vladyslav Honcharuk [aut] (ORCID:
    <https://orcid.org/0000-0002-7464-500X>),
  Alexis Vandenbon [aut] (ORCID: <https://orcid.org/0000-0003-2180-5732>)
Maintainer: Afeefa Zainab <afeeffazainab@gmail.com>
Repository: CRAN
Date/Publication: 2025-12-22 17:20:02 UTC
Built: R 4.4.3; ; 2026-02-04 04:14:16 UTC; windows
