Package: metaGE
Title: Meta-Analysis for Detecting Genotype x Environment Associations
Version: 1.2.2
Authors@R: c(
    person("Annaïg", "De Walsche", , "annaig.de-walsche@inrae.fr", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0603-1716")),
    person("Tristan", "Mary-Huard", , "tristan.mary-huard@agroparistech.fr", role = "aut",
           comment = c(ORCID = "0000-0002-3839-9067"))
  )
Maintainer: Annaïg De Walsche <annaig.de-walsche@inrae.fr>
Description: Provides functions to perform all steps of genome-wide
    association meta-analysis for studying Genotype x Environment
    interactions, from collecting the data to the manhattan plot.  The
    procedure accounts for the potential correlation between studies. In
    addition to the Fixed and Random models, one can investigate the
    relationship between QTL effects and some qualitative or quantitative
    covariate via the test of contrast and the meta-regression,
    respectively.  The methodology is available from: (De Walsche, A., et
    al. (2025) \doi{10.1371/journal.pgen.1011553}).
License: GPL-3
Depends: R (>= 3.0.2)
Imports: corrplot, data.table, dplyr, emdbook, furrr, future, ggplot2,
        ggrepel, gplots, graphics, grDevices, ks, purrr, qqman, Rfast,
        stats, stringr, tibble, tidyr, utils, viridis
Suggests: DT, knitr, rmarkdown, tidyverse
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-07-21 09:21:10 UTC; Annaig
Author: Annaïg De Walsche [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0603-1716>),
  Tristan Mary-Huard [aut] (ORCID:
    <https://orcid.org/0000-0002-3839-9067>)
Repository: CRAN
Date/Publication: 2025-07-21 12:30:07 UTC
Built: R 4.5.2; ; 2026-01-23 04:03:37 UTC; windows
