
bibentry(bibtype = "Article",
         title        = "{RAVE}: Comprehensive open-source software for reproducible analysis and visualization of intracranial EEG data",
         author       = c(as.person("John F. Magnotti"),
                          as.person("Zhengjia Wang"),
                          as.person("Michael S. Beauchamp")),
         journal      = "NeuroImage",
         year         = "2020",
         volume       = "223",
         pages        = "117341",
         doi          = "10.1016/j.neuroimage.2020.117341",
         header       = "This package is part of RAVE. To cite this package in publications use, please check the following Neuroimage paper from Beauchamp's lab.",
         footer       = "Please check https://rave.wiki for more information.",
         textVersion  = "Magnotti, JF, and Wang, Z, and Beauchamp, MS. RAVE: comprehensive open-source software for reproducible analysis and visualization of intracranial EEG data. NeuroImage, 223, p.117341."
)


bibentry(bibtype = "Article",
         title        = "Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain",
         author       = c(as.person("Brian B. Avants"),
                          as.person("Charles L. Epstein"),
                          as.person("Murray Grossman"),
                          as.person("James C. Gee")),
         journal      = "Medical image analysis",
         year         = "2008",
         volume       = "12",
         pages        = "26-41",
         number       = "1",
         doi          = "10.1016/j.media.2007.06.004",
         header       = "If you use `register_volume3d` for imaging registration, please cite the following paper.",
         textVersion  = "Avants BB, Epstein CL, Grossman M, Gee JC (2008). Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Medical image analysis, 12(1), 26-41."
)

bibentry(bibtype = "Article",
         title        = "Cortical surface-based analysis: II: inflation, flattening, and a surface-based coordinate system",
         author       = c(as.person("Bruce Fischl"),
                          as.person("Martin I. Sereno"),
                          as.person("Anders M. Dale")),
         journal      = "Neuroimage",
         year         = "1999",
         volume       = "9",
         number       = "2",
         pages        = "195-207",
         doi          = "10.1006/nimg.1998.0396",
         header       = "If you use the mris_*() functions for surface manipulation, please also cite:",
         textVersion  = "Fischl B, Sereno MI, Dale AM (1999). Cortical surface-based analysis: II: inflation, flattening, and a surface-based coordinate system. Neuroimage, 9(2), 195-207. doi:10.1006/nimg.1998.0396."
)


bibentry(bibtype = "Article",
         title        = "{CARLA}: Adjusted common average referencing for cortico-cortical evoked potential data",
         author       = c(as.person("Harvey Huang"),
                          as.person("Gabriela Ojeda Valencia"),
                          as.person("Nicholas M. Gregg"),
                          as.person("Gamaleldin M. Osman"),
                          as.person("Morgan N. Montoya"),
                          as.person("Gregory A. Worrell"),
                          as.person("Kai J. Miller"),
                          as.person("Dora Hermes")),
         journal      = "Journal of Neuroscience Methods",
         year         = "2024",
         volume       = "407",
         pages        = "110153",
         doi          = "10.1016/j.jneumeth.2024.110153",
         header       = "If you use the carla() function, please also cite the original CARLA manuscript:",
         textVersion  = "Huang H, Ojeda Valencia G, Gregg NM, Osman GM, Montoya MN, Worrell GA, Miller KJ, Hermes D (2024). CARLA: Adjusted common average referencing for cortico-cortical evoked potential data. Journal of Neuroscience Methods, 407, 110153. doi:10.1016/j.jneumeth.2024.110153."
)

bibentry(bibtype = "Article",
         title        = "Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data",
         author       = c(as.person("Harvey Huang"),
                          as.person("Joshua A. Adkinson"),
                          as.person("Michael A. Jensen"),
                          as.person("Mohammed Hasen"),
                          as.person("Isabel A. Danstrom"),
                          as.person("Kelly R. Bijanki"),
                          as.person("Nicholas M. Gregg"),
                          as.person("Kai J. Miller"),
                          as.person("Sameer A. Sheth"),
                          as.person("Dora Hermes"),
                          as.person("Eleonora Bartoli")),
         journal      = "Journal of Neuroscience Methods",
         year         = "2025",
         volume       = "419",
         pages        = "110461",
         doi          = "10.1016/j.jneumeth.2025.110461",
         header       = "If you use carla(..., virtual_reference = TRUE), please also cite the modified CARLA manuscript:",
         textVersion  = "Huang H, Adkinson JA, Jensen MA, Hasen M, Danstrom IA, Bijanki KR, Gregg NM, Miller KJ, Sheth SA, Hermes D, Bartoli E (2025). Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data. Journal of Neuroscience Methods, 419, 110461. doi:10.1016/j.jneumeth.2025.110461."
)


bibentry(bibtype = "Article",
         title        = "Canonical response parameterization: Quantifying the structure of responses to single-pulse intracranial electrical brain stimulation",
         author       = c(as.person("Kai J. Miller"),
                          as.person("Klaus-Robert Mueller"),
                          as.person("Gabriela Ojeda Valencia"),
                          as.person("Harvey Huang"),
                          as.person("Nicholas M. Gregg"),
                          as.person("Gregory A. Worrell"),
                          as.person("Dora Hermes")),
         journal      = "PLOS Computational Biology",
         year         = "2023",
         volume       = "19",
         number       = "5",
         pages        = "e1011105",
         doi          = "10.1371/journal.pcbi.1011105",
         header       = "If you use the crp() function, please also cite the original CRP manuscript:",
         textVersion  = "Miller KJ, Mueller K-R, Ojeda Valencia G, Huang H, Gregg NM, Worrell GA, Hermes D (2023). Canonical response parameterization: Quantifying the structure of responses to single-pulse intracranial electrical brain stimulation. PLOS Computational Biology, 19(5), e1011105. doi:10.1371/journal.pcbi.1011105."
)

bibentry(bibtype = "Article",
         title        = "Basis profile curve identification to understand electrical stimulation effects in human brain networks",
         author       = c(as.person("Kai J. Miller"),
                          as.person("Klaus-Robert Mueller"),
                          as.person("Dora Hermes")),
         journal      = "PLOS Computational Biology",
         year         = "2021",
         volume       = "17",
         number       = "9",
         pages        = "e1008710",
         doi          = "10.1371/journal.pcbi.1008710",
         header       = "If you use the bpc() function, please also cite the original BPC manuscript:",
         textVersion  = "Miller KJ, Mueller K-R, Hermes D (2021). Basis profile curve identification to understand electrical stimulation effects in human brain networks. PLOS Computational Biology, 17(9), e1008710. doi:10.1371/journal.pcbi.1008710."
)
