Last updated on 2026-04-17 22:51:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 21.04 | 224.98 | 246.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 14.14 | 147.27 | 161.41 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 36.00 | 325.90 | 361.90 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 39.00 | 369.37 | 408.37 | OK | |
| r-devel-macos-arm64 | 1.1.1 | 5.00 | 66.00 | 71.00 | OK | |
| r-devel-windows-x86_64 | 1.1.1 | 24.00 | 187.00 | 211.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.1 | 18.66 | 201.76 | 220.42 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 17.00 | 197.23 | 214.23 | OK | |
| r-release-macos-arm64 | 1.1.1 | 5.00 | 60.00 | 65.00 | OK | |
| r-release-macos-x86_64 | 1.1.1 | 14.00 | 181.00 | 195.00 | OK | |
| r-release-windows-x86_64 | 1.1.1 | 22.00 | 206.00 | 228.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 5.00 | 65.00 | 70.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.1.1 | 14.00 | 178.00 | 192.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.1.1 | 34.00 | 269.00 | 303.00 | NOTE |
Version: 1.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [25s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> test_check("dyngen")
Loading required package: dyngen
using C++ compiler: 'g++.exe (GCC) 14.3.0'
make[1]: Entering directory '/d/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1/sourcecpp_6d0c1f2ee2f'
g++ -std=gnu++20 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.6/Rcpp/include" -I"D:/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1" -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file6d0c92155ab.cpp -o file6d0c92155ab.o
In file included from D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp.h:49,
from file6d0c92155ab.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h: In constructor 'Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const std::string&, const std::string&)':
D:/RCompile/CRANpkg/lib/4.6/Rcpp/include/Rcpp/Function.h:75:65: error: 'R_NamespaceRegistry' was not declared in this scope
75 | Shield<SEXP> env(R_getVarEx(Rf_install(ns.c_str()), R_NamespaceRegistry, FALSE, R_UnboundValue));
| ^~~~~~~~~~~~~~~~~~~
make[1]: *** [D:/RCompile/recent/R/etc/x64/Makeconf:304: file6d0c92155ab.o] Error 1
make[1]: Leaving directory '/d/temp/2026_04_17_01_50_00_1722/RtmpMngTfg/file6d0c3f703706/gillespie/sourceCpp-x86_64-w64-mingw32-1.1.1/sourcecpp_6d0c1f2ee2f'
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 64 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-generate_dataset.R:27:1'): (code run outside of `test_that()`) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map(rcpp_codes, RcppXPtrUtils::cppXPtr, cacheDir = tmpdir, includes = if (hardcode_params) paste0("#define CONST_", names(params), " ", params, "\n", collapse = "") else character())`: ℹ In index: 1.
Caused by error in `sourceCpp()`:
! Error 1 occurred building shared library.
Backtrace:
▆
1. ├─dyngen::generate_dataset(init, make_plots = TRUE) at test-generate_dataset.R:27:1
2. │ ├─dyngen::generate_experiment(generate_cells(generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model))))))
3. │ ├─dyngen::generate_cells(generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model)))))
4. │ └─dyngen::generate_gold_standard(generate_kinetics(generate_feature_network(generate_tf_network(model))))
5. │ └─dyngen:::.generate_gold_precompile_reactions(model)
6. │ └─GillespieSSA2::compile_reactions(...)
7. │ └─purrr::map(...)
8. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─RcppXPtrUtils (local) .f(.x[[i]], ...)
13. │ └─Rcpp::cppFunction(...)
14. │ └─Rcpp::sourceCpp(...)
15. │ └─base::stop("Error ", status, " occurred building shared library.")
16. └─base::.handleSimpleError(...)
17. └─purrr (local) h(simpleError(msg, call))
18. └─cli::cli_abort(...)
19. └─rlang::abort(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 64 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘anndataR’
Flavor: r-oldrel-macos-arm64
Version: 1.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘anndataR’
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-x86_64