Last updated on 2026-03-21 21:53:21 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| readHAC | 2 | 12 | ||
| RTMB | 2 | 2 | 1 | 9 |
| TMB | 3 | 11 | ||
| tmbstan | 1 | 4 | 9 |
Current CRAN status: NOTE: 2, OK: 12
Version: 1.0
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 2, WARN: 2, NOTE: 1, OK: 9
Version: 1.8
Check: examples
Result: ERROR
Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ### is.array.osa is.matrix.osa
>
> ### ** Examples
>
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+ obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+ ans <- 0
+ jump <- c(p$rw[1], diff(p$rw))
+ ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+ ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+ ans
+ }
> obj <- MakeADFun(func,
+ parameters=list(rw=rep(0,20), sd=1),
+ random="rw")
Error in advector(e2) :
Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown
Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
▆
1. └─RTMB::MakeTape(diff, numeric(5))
2. └─RTMB:::.MakeTape(f, x)
3. ├─base (local) f(x)
4. └─RTMB::diff.advector(x)
5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
6. └─RTMB::Ops.advector(...)
7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
8. └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’
--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’
SUMMARY: processing the following file failed:
‘RTMB-advanced.rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.8
Check: examples
Result: ERROR
Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ### is.array.osa is.matrix.osa
>
> ### ** Examples
>
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+ obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+ ans <- 0
+ jump <- c(p$rw[1], diff(p$rw))
+ ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+ ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+ ans
+ }
> obj <- MakeADFun(func,
+ parameters=list(rw=rep(0,20), sd=1),
+ random="rw")
Error in advector(e2) :
Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown
Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
▆
1. └─RTMB::MakeTape(diff, numeric(5))
2. └─RTMB:::.MakeTape(f, x)
3. ├─base (local) f(x)
4. └─RTMB::diff.advector(x)
5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
6. └─RTMB::Ops.advector(...)
7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
8. └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’
--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’
SUMMARY: processing the following file failed:
‘RTMB-advanced.rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.9
Check: installed package size
Result: NOTE
installed size is 134.1Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 131.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.9
Check: for code/documentation mismatches
Result: WARN
Codoc mismatches from Rd file 'ADvector.Rd':
\S4method{findInterval}{advector,advector}
Code: function(x, vec, rightmost.closed = FALSE, all.inside = FALSE,
left.open = FALSE)
Docs: function(x, vec, rightmost.closed = FALSE, all.inside = FALSE,
left.open = FALSE, checkSorted = TRUE, checkNA = TRUE)
Argument names in docs not in code:
checkSorted checkNA
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.8
Check: installed package size
Result: NOTE
installed size is 10.3Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 8.3Mb
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.9.20
Check: installed package size
Result: NOTE
installed size is 16.6Mb
sub-directories of 1Mb or more:
examples 12.4Mb
include 3.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 4, OK: 9
Version: 1.0.91
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Kasper",
family = "Kristensen",
role = c("aut", "cre"),
email = "kaskr@dtu.dk")
as necessary.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.91
Check: compiled code
Result: NOTE
File ‘tmbstan/libs/tmbstan.so’:
Found non-API call to R: ‘Rf_findVar’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.91
Check: compiled code
Result: WARN
File ‘tmbstan/libs/tmbstan.so’:
Found non-API call to R: ‘Rf_findVar’
This entry point may be removed soon.
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.91
Check: installed package size
Result: NOTE
installed size is 46.8Mb
sub-directories of 1Mb or more:
libs 46.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.91
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64