Last updated on 2026-03-28 11:49:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 40.89 | 737.18 | 778.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 24.24 | 484.53 | 508.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 68.00 | 722.05 | 790.05 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 68.00 | 1268.84 | 1336.84 | OK | |
| r-devel-macos-arm64 | 0.11.0 | 8.00 | 120.00 | 128.00 | OK | |
| r-devel-windows-x86_64 | 0.11.0 | 40.00 | 560.00 | 600.00 | OK | |
| r-patched-linux-x86_64 | 0.11.0 | 53.28 | 656.07 | 709.35 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 34.44 | 636.66 | 671.10 | OK | |
| r-release-macos-arm64 | 0.11.0 | 8.00 | 113.00 | 121.00 | OK | |
| r-release-macos-x86_64 | 0.11.0 | 28.00 | 883.00 | 911.00 | OK | |
| r-release-windows-x86_64 | 0.11.0 | 38.00 | 516.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.0 | 8.00 | 107.00 | 115.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.11.0 | 24.00 | 400.00 | 424.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.11.0 | 52.00 | 654.00 | 706.00 | ERROR |
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-23 08:14:28.445544: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.445781: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.448718: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.454427: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.466704: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.466827: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.469401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.475139: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.481901: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.48208: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.486462: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.501297: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.501677: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.508111: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.508253: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.554855: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.569702: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.570263: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.599514: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.599669: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.604706: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.638057: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.648015: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.648238: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.656088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.732572: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.733599: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.782767: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.782909: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.785274: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.791339: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.798693: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.798837: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.803385: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.818232: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.818598: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.853303: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.853446: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.855929: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.862323: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.87601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.876214: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.881248: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.895996: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.896374: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.928906: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.929028: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.931067: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.936888: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:28.947236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.947393: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.951978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.966932: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:28.967299: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:28.985915: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:28.986056: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:28.988403: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:28.994435: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.007121: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.007337: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.011907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.026945: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:29.027341: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:29.057147: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.057385: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.059752: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.065931: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.081954: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.082164: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.087034: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.101948: embedding
> test_pipeop_isomap.R: 2026-03-23 08:14:29.102314: DONE
> test_pipeop_isomap.R: 2026-03-23 08:14:29.123791: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.12392: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.126403: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.132599: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.152912: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.153068: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.155645: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.161717: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 08:14:29.167856: Isomap START
> test_pipeop_isomap.R: 2026-03-23 08:14:29.167972: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 08:14:29.170495: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 08:14:29.176557: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [255s/205s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-28 03:20:13.082482: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.083029: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.101301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:13.130251: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:13.199174: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.19949: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.206474: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:13.237167: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:13.275451: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.275869: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.300996: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:13.357758: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:13.366645: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:13.397125: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.397448: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.428132: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:13.492025: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:13.501663: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:13.610607: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.610937: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.66067: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:13.822356: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:13.880786: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:13.882627: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:13.943944: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:14.304499: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:14.308511: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:14.4984: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:14.498703: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:14.514378: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:14.54462: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:15.162472: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:15.162917: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:15.184422: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:15.254541: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:15.255734: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:15.441044: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:15.442345: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:15.458162: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:15.491628: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:15.543602: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:15.544026: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:15.570188: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:15.64916: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:15.650276: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:15.768982: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:15.769295: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:15.783758: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:15.81092: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:15.875045: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:15.882466: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:15.905484: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:15.985265: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:15.986429: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:16.088212: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.088501: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.095797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.145543: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:16.22866: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.22918: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.258555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.322356: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:16.323508: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:16.434428: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.434791: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.442495: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.470518: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:16.535149: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.535705: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.576849: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.644922: embedding
> test_pipeop_isomap.R: 2026-03-28 03:20:16.646027: DONE
> test_pipeop_isomap.R: 2026-03-28 03:20:16.76886: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.769142: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.784247: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.805754: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:16.903188: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.903479: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.916854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:16.944521: Classical Scaling
> test_pipeop_isomap.R: 2026-03-28 03:20:16.97216: Isomap START
> test_pipeop_isomap.R: 2026-03-28 03:20:16.972455: constructing knn graph
> test_pipeop_isomap.R: 2026-03-28 03:20:16.989605: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-28 03:20:17.035987: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_spatialsign.R:3:1', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_typecheck.R:188:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [252s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-23 21:00:44.47244: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:44.473154: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:44.487747: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:44.513581: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:44.594618: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:44.595274: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:44.607591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:44.624061: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:44.669293: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:44.670326: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:44.692932: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:44.740716: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:44.742626: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:44.789387: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:44.790065: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:44.813203: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:44.862542: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:44.864468: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:45.017601: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:45.018277: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:45.037761: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:45.153124: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:45.214047: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:45.215092: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:45.257886: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:45.487957: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:45.494541: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:45.71873: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:45.71934: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:45.729735: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:45.751538: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:45.818648: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:45.819632: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:45.842419: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:45.893012: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:45.894786: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:46.119834: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.120479: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.132754: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.155793: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:46.232643: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.233582: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.256225: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.308101: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:46.309968: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:46.433534: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.434299: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.443175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.466872: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:46.542205: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.543016: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.58602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.636545: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:46.638347: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:46.747337: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.747966: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.758365: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.779329: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:46.849204: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:46.849835: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:46.868552: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:46.919583: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:46.921409: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:47.049045: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:47.049694: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:47.06085: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:47.08215: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:47.155527: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-23 21:00:47.15643: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:47.175171: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:47.223412: embedding
> test_pipeop_isomap.R: 2026-03-23 21:00:47.225419: DONE
> test_pipeop_isomap.R: 2026-03-23 21:00:47.370904: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:47.371632: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:47.403356: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:47.4239: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:47.557416: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:47.558091: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:47.56962: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:47.593208: Classical Scaling
> test_pipeop_isomap.R: 2026-03-23 21:00:47.630811: Isomap START
> test_pipeop_isomap.R: 2026-03-23 21:00:47.631432: constructing knn graph
> test_pipeop_isomap.R: 2026-03-23 21:00:47.644637: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-23 21:00:47.666477: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_subsample.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64