Last updated on 2026-03-28 11:49:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 6.60 | 54.97 | 61.57 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 4.22 | 38.23 | 42.45 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 10.00 | 78.33 | 88.33 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 11.00 | 78.63 | 89.63 | OK | |
| r-devel-macos-arm64 | 2.0.0 | 2.00 | 14.00 | 16.00 | OK | |
| r-devel-windows-x86_64 | 2.0.0 | 8.00 | 73.00 | 81.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 4.94 | 45.80 | 50.74 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 5.88 | 45.73 | 51.61 | OK | |
| r-release-macos-arm64 | 2.0.0 | OK | ||||
| r-release-macos-x86_64 | 2.0.0 | 4.00 | 59.00 | 63.00 | OK | |
| r-release-windows-x86_64 | 2.0.0 | 9.00 | 71.00 | 80.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 2.0.0 | 4.00 | 58.00 | 62.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.0 | 11.00 | 87.00 | 98.00 | OK |
Version: 2.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(otargen)
>
> test_check("otargen")
\ Sending GraphQL request...
Saving _problems/test_gwasCredibleSetsQuery-14.R
x Sending GraphQL request... [30.6s]
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
══ Skipped tests (30) ══════════════════════════════════════════════════════════
• On CRAN (30): 'test_GWASColocQuery.R:2:3', 'test_adverseEventsQuery.R:2:3',
'test_chemblQuery.R:2:3', 'test_clinVarQuery.R:2:3',
'test_compGenomicsQuery.R:2:3', 'test_depMapQuery.R:2:3',
'test_europePMCQuery.R:2:3', 'test_geneBurdenQuery.R:2:3',
'test_geneOntologyQuery.R:2:3', 'test_geneticConstraintQuery.R:2:3',
'test_genomicsEnglandQuery.R:2:3', 'test_hallmarksQuery.R:2:3',
'test_interactionsQuery.R:2:3', 'test_knownDrugsChemblQuery.R:2:3',
'test_knownDrugsGeneQuery.R:2:3', 'test_mechanismsOfActionQuery.R:2:3',
'test_mousePhenotypesQuery.R:2:3', 'test_orphanetQuery.R:2:3',
'test_pathwaysQuery.R:2:3', 'test_pharmacogenomicsChemblQuery.R:2:3',
'test_pharmacogenomicsGeneQuery.R:2:3',
'test_pharmacogenomicsVariantQuery.R:2:3', 'test_qtlCredibleSetsQuery.R:2:3',
'test_safetyQuery.R:2:3', 'test_sharedTraitStudiesQuery.R:2:3',
'test_uniProtVariantsQuery.R:2:3', 'test_uniprotLiteratureQuery.R:2:3',
'test_variantEffectPredictorQuery.R:2:3', 'test_variantEffectQuery.R:2:3',
'test_variantsQuery.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_gwasCredibleSetsQuery.R:10:3'): gwasCredibleSetsQuery returns expected results ──
Error in `gwasCredibleSetsQuery(ensemblId = ensemblId, efoId = efoId, size = size)`: GraphQL query failed. HTTP status: 502
Backtrace:
▆
1. └─otargen::gwasCredibleSetsQuery(...) at test_gwasCredibleSetsQuery.R:10:3
[ FAIL 1 | WARN 0 | SKIP 30 | PASS 1 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang