Last updated on 2026-05-30 09:51:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.1 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 1.4.1 | 8.07 | 150.27 | 158.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.1 | 18.00 | 317.86 | 335.86 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.1 | 20.00 | 360.33 | 380.33 | OK | |
| r-devel-windows-x86_64 | 1.4.1 | 16.00 | 274.00 | 290.00 | OK | |
| r-patched-linux-x86_64 | 1.4.1 | 10.83 | 189.12 | 199.95 | OK | |
| r-release-linux-x86_64 | 1.4.1 | 10.90 | 193.31 | 204.21 | OK | |
| r-release-macos-arm64 | 1.4.1 | 3.00 | 59.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.4.1 | 9.00 | 241.00 | 250.00 | OK | |
| r-release-windows-x86_64 | 1.4.1 | 17.00 | 273.00 | 290.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.1 | 3.00 | 63.00 | 66.00 | OK | |
| r-oldrel-macos-x86_64 | 1.4.1 | 10.00 | 172.00 | 182.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.1 | 21.00 | 346.00 | 367.00 | OK |
Version: 1.4.1
Check: examples
Result: ERROR
Running examples in ‘serocalculator-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: strat_ests_scatterplot
> ### Title: Scatterplot method for 'summary.seroincidence.by' objects
> ### Aliases: strat_ests_scatterplot
> ### Keywords: internal
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> library(ggplot2)
>
> xs_data <-
+ sees_pop_data_pk_100
>
> curve <-
+ typhoid_curves_nostrat_100 |>
+ filter(antigen_iso %in% c("HlyE_IgA", "HlyE_IgG"))
>
> noise <-
+ example_noise_params_pk
>
> est2 <- est_seroincidence_by(
+ strata = c("catchment", "ageCat"),
+ pop_data = xs_data,
+ sr_params = curve,
+ noise_params = noise,
+ curve_strata_varnames = NULL,
+ noise_strata_varnames = NULL,
+ antigen_isos = c("HlyE_IgG", "HlyE_IgA"),
+ num_cores = 2 # Allow for parallel processing to decrease run time
+ )
Error in serverSocket(port = port) :
creation of server socket failed: port 11526 cannot be opened
Calls: est_seroincidence_by ... withCallingHandlers -> <Anonymous> -> makePSOCKcluster -> serverSocket
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
graph.curve.params 4.198 0.037 5.469
autoplot.summary.seroincidence.by 2.192 0.111 8.390
Flavor: r-devel-linux-x86_64-debian-clang