Last updated on 2026-03-21 21:53:36 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 3 | 11 |
Current CRAN status: ERROR: 3, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [123s/253s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.605, system: 0.049, elapsed: 2.766 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.788, system: 0.099, elapsed: 14.373 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.021, elapsed: 0.936 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.864, system: 0.780, elapsed: 77.727 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.005, elapsed: 0.203 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.250, system: 0.978, elapsed: 96.956 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.606, system: 0.044, elapsed: 3.061 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.618, system: 0.088, elapsed: 12.568 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.018, elapsed: 1.016 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.031, system: 0.791, elapsed: 85.174 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.004, elapsed: 0.199 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.221, system: 0.969, elapsed: 102.749 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.037, elapsed: 2.077 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.321, system: 0.058, elapsed: 10.440 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.351, system: 0.029, elapsed: 0.202 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.406, system: 1.045, elapsed: 5.268 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.003, elapsed: 0.173 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.292, system: 0.236, elapsed: 0.949 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 23.037, system: 1.470, elapsed: 19.861 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.699, system: 0.057, elapsed: 1.553 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.951, system: 0.042, elapsed: 8.935 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.281, system: 0.025, elapsed: 0.228 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 10.007, system: 0.943, elapsed: 5.129 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.004, elapsed: 0.178 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 28.936, system: 1.086, elapsed: 10.453 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 51.189, system: 2.219, elapsed: 27.157 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'mapi-Ex.R' failed
The error most likely occurred in:
> ### Name: MAPI_GridHexagonal
> ### Title: Function MAPI_GridHexagonal
> ### Aliases: MAPI_GridHexagonal
>
> ### ** Examples
>
> data("samples")
> # Builds a grid of hexagonal cells according to samples coordinates (columns x and y)
> # using the EPSG:3857 projection and an halfwidth cell value of hw=250m.
> grid <- MAPI_GridHexagonal(samples, crs=3857, hw=250)
Building local cartesian grid...
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/295s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.723, system: 0.064, elapsed: 5.165 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.900, system: 0.087, elapsed: 24.935 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.231, system: 0.022, elapsed: 1.166 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.703, system: 0.811, elapsed: 100.374 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.003, elapsed: 0.184 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.330, system: 1.012, elapsed: 133.029 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.037, elapsed: 2.204 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.528, system: 0.060, elapsed: 14.254 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.215, system: 0.017, elapsed: 0.930 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.172, system: 0.603, elapsed: 31.468 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.191 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.248, system: 0.742, elapsed: 49.798 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.523, system: 0.027, elapsed: 2.229 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.506, system: 0.074, elapsed: 12.800 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.014, elapsed: 0.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.508, system: 0.664, elapsed: 33.993 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.190 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.251, system: 0.315, elapsed: 1.095 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.859, system: 1.120, elapsed: 51.513 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.551, system: 0.031, elapsed: 1.758 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.718, system: 0.100, elapsed: 13.597 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.015, elapsed: 0.530 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.819, system: 0.703, elapsed: 14.188 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.005, elapsed: 0.208 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 14.929, system: 1.020, elapsed: 19.939 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 34.081, system: 1.904, elapsed: 51.000 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64