Last updated on 2026-03-21 21:53:38 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| faunabr | 14 | ||
| florabr | 1 | 13 | |
| RuHere | 2 | 2 | 10 |
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, OK: 13
Version: 1.3.1
Check: examples
Result: ERROR
Running examples in 'florabr-Ex.R' failed
The error most likely occurred in:
> ### Name: get_pam
> ### Title: Get a presence-absence matrix
> ### Aliases: get_pam
>
> ### ** Examples
>
> data("bf_data") #Load Flora e Funga do Brasil data
> #Select endemic and native species of trees with occurrence only in Amazon
> am_trees <- select_species(data = bf_data,
+ include_subspecies = FALSE,
+ include_variety = FALSE,
+ kingdom = "Plantae",
+ group = "All", subgroup = "All",
+ family = "All", genus = "All",
+ lifeForm = "Tree", filter_lifeForm = "only",
+ habitat = "All", filter_habitat = "in",
+ biome = "Amazon",
+ filter_biome = "only",
+ state = "All", filter_state = "and",
+ vegetation = "All",
+ filter_vegetation = "in",
+ endemism = "Endemic", origin = "Native",
+ taxonomicStatus = "Accepted",
+ nomenclaturalStatus = "All")
> #Get presence-absence matrix
> pam_am <- get_pam(data = am_trees, by_biome = TRUE, by_state = TRUE,
+ by_vegetation = FALSE, remove_empty_sites = TRUE,
+ return_richness_summary = TRUE,
+ return_spatial_richness = TRUE,
+ return_plot = TRUE)
Flavor: r-release-windows-x86_64
Current CRAN status: ERROR: 2, NOTE: 2, OK: 10
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BIEN’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in 'RuHere-Ex.R' failed
The error most likely occurred in:
> ### Name: check_states
> ### Title: Check if the records fall in the state assigned in the metadata
> ### Aliases: check_states
>
> ### ** Examples
>
> # Load example data
> data("occurrences", package = "RuHere") #Import data example
> # Subset occurrences for Araucaria angustifolia
> occ <- occurrences[occurrences$species == "Araucaria angustifolia", ]
> # Standardize country names
> occ_country <- standardize_countries(occ = occ,
+ return_dictionary = FALSE)
> # Standardize state names
> occ_state <- standardize_states(occ = occ_country,
+ country_column = "country_suggested",
+ return_dictionary = FALSE)
> # Check whether records fall within assigned states
> occ_state_checked <- check_states(occ = occ_state,
+ state_column = "state_suggested")
Warning in check_states(occ = occ_state, state_column = "state_suggested") :
The following states listed in the 'state_suggested' column were absent in the world map used for validation: NA, mexico
Testing states...
Flavor: r-release-windows-x86_64
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 1.8Mb
doc 1.1Mb
libs 1.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64