Execute the self-controlled case series (SCCS) design using observational data in the OMOP Common Data Model. Extracts all necessary data from the database and transforms it to the format required for SCCS. Age and season can be modeled using splines assuming constant hazard within calendar months. Event-dependent censoring of the observation period can be corrected for. Many exposures can be included at once (MSCCS), with regularization on all coefficients except for the exposure of interest. Includes diagnostics for all major assumptions of the SCCS.
| Version: | 6.0.0 |
| Depends: | R (≥ 4.1.0), Cyclops (≥ 3.4.0), DatabaseConnector (≥ 6.0.0), Andromeda (≥ 1.0.0) |
| Imports: | SqlRender (≥ 1.16.0), dplyr (≥ 1.0.0), Rcpp (≥ 1.0.9), ParallelLogger (≥ 3.4.0), EmpiricalCalibration, splines, ggplot2 (≥ 3.4.0), methods, utils, checkmate, readr, ResultModelManager, jsonlite, digest, R6 |
| LinkingTo: | Rcpp |
| Suggests: | zip, testthat, knitr, rmarkdown, Eunomia, withr |
| Published: | 2025-06-23 |
| Author: | Martijn Schuemie [aut, cre], Patrick Ryan [aut], Trevor Shaddox [aut], Marc Suchard [aut] |
| Maintainer: | Martijn Schuemie <schuemie at ohdsi.org> |
| BugReports: | https://github.com/OHDSI/SelfControlledCaseSeries/issues |
| License: | Apache License 2.0 |
| URL: | https://ohdsi.github.io/SelfControlledCaseSeries/, https://github.com/OHDSI/SelfControlledCaseSeries |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | SelfControlledCaseSeries results |
| Reference manual: | SelfControlledCaseSeries.pdf |
| Vignettes: |
Multiple analyses using SelfControlledCaseSeries (source, R code) Results schema (source, R code) Single studies using SelfControlledCaseSeries (source, R code) |
| Package source: | SelfControlledCaseSeries_6.0.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): SelfControlledCaseSeries_6.0.0.tgz, r-oldrel (arm64): SelfControlledCaseSeries_6.0.0.tgz, r-release (x86_64): SelfControlledCaseSeries_6.0.0.tgz, r-oldrel (x86_64): SelfControlledCaseSeries_6.0.0.tgz |
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