A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
| Version: |
3.1.0 |
| Depends: |
R (≥ 4.3.0) |
| Imports: |
methods, mgcv, stats, utils, ape, dplyr, ecodive, emmeans, fillpattern, ggbeeswarm, ggnewscale, ggplot2, ggrepel, ggtext, jsonlite, magrittr, patchwork, pillar, plyr, readr, readxl, vegan |
| Suggests: |
cli, crayon, ggdensity, glue, h5lite, labeling, lifecycle, Matrix, openxlsx, optparse, pkgconfig, prettycode, R6, rlang, scales, testthat, tibble, tsne, uwot |
| Published: |
2026-05-08 |
| DOI: |
10.32614/CRAN.package.rbiom |
| Author: |
Daniel P. Smith 
[aut, cre],
Alkek Center for Metagenomics and Microbiome Research [cph, fnd] |
| Maintainer: |
Daniel P. Smith <dansmith01 at gmail.com> |
| BugReports: |
https://github.com/cmmr/rbiom/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://cmmr.github.io/rbiom/, https://github.com/cmmr/rbiom |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
rbiom results |