Function
score
Returns the score for aligning the entries entryH and entryV .
Include Headers
seqan/score.h
Parameters
The scoring scheme to use. A scoring scheme. | |
Entry in sequence one. Types: SequenceEntryForScore | |
Entry in sequence two. Types: SequenceEntryForScore | |
Aligned character in the first sequence. | |
Aligned character in the second sequence. |
Status
The version that explicitely requires two characters is deprecated. For using (or defining) custom scoring schemes better use the functions
score, scoreGapOpenVertical, scoreGapExtendVertical, scoreGapOpenHorizontal and scoreGapExtendHorizontal
as they require character positions and sequences and allow for position-dependent scoring schemes.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de