MANIFEST.in
basesetup.py
setup.py
examples/.gitignore
examples/1vii_3frames.pdb
examples/ala2.h5
examples/atom-selection.ipynb
examples/centroids.ipynb
examples/clustering.ipynb
examples/hbonds.ipynb
examples/iterload.ipynb
examples/native-contact.ipynb
examples/nmr.ipynb
examples/principal-components.ipynb
examples/ramachandran-plot.ipynb
examples/rmsd-benchmark.ipynb
examples/rmsd-drift.ipynb
examples/simulation-with-openmm.ipynb
examples/solvent-accessible-surface-area.ipynb
examples/test_examples.py
examples/two-pass-clustering.ipynb
mdtraj/.gitignore
mdtraj/__init__.py
mdtraj/io.py
mdtraj/version.py
mdtraj.egg-info/PKG-INFO
mdtraj.egg-info/SOURCES.txt
mdtraj.egg-info/dependency_links.txt
mdtraj.egg-info/entry_points.txt
mdtraj.egg-info/not-zip-safe
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mdtraj/core/__init__.py
mdtraj/core/element.py
mdtraj/core/residue_names.py
mdtraj/core/selection.py
mdtraj/core/topology.py
mdtraj/core/trajectory.py
mdtraj/formats/__init__.py
mdtraj/formats/amberrst.py
mdtraj/formats/arc.py
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mdtraj/formats/psf.py
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mdtraj/formats/dcd/include/vmdplugin.h
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mdtraj/formats/pdb/README.md
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mdtraj/formats/xtc/src/README
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mdtraj/formats/xtc/src/xdrfile_trr.c
mdtraj/formats/xtc/src/xdrfile_xtc.c
mdtraj/geometry/.gitignore
mdtraj/geometry/__init__.py
mdtraj/geometry/alignment.py
mdtraj/geometry/angle.py
mdtraj/geometry/contact.py
mdtraj/geometry/dihedral.py
mdtraj/geometry/distance.py
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mdtraj/geometry/drid.pyx
mdtraj/geometry/dssp.py
mdtraj/geometry/hbond.py
mdtraj/geometry/internal.py
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mdtraj/geometry/rdf.py
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mdtraj/geometry/thermodynamic_properties.py
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mdtraj/geometry/include/math_patch.h
mdtraj/geometry/include/moments.h
mdtraj/geometry/include/msvccompat.h
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mdtraj/geometry/include/neighbors.hpp
mdtraj/geometry/include/sasa.h
mdtraj/geometry/include/vectorize_sse.h
mdtraj/geometry/src/.gitignore
mdtraj/geometry/src/_geometry.cpp
mdtraj/geometry/src/_geometry.pyx
mdtraj/geometry/src/dridkernels.cpp
mdtraj/geometry/src/dssp.cpp
mdtraj/geometry/src/geometry.cpp
mdtraj/geometry/src/image_molecules.pxi
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mdtraj/nmr/__init__.py
mdtraj/nmr/scalar_couplings.py
mdtraj/nmr/shift_wrappers.py
mdtraj/reporters/__init__.py
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mdtraj/reporters/dcdreporter.py
mdtraj/reporters/hdf5reporter.py
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mdtraj/rmsd/.gitignore
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mdtraj/rmsd/_lprmsd.cpp
mdtraj/rmsd/_lprmsd.pyx
mdtraj/rmsd/_rmsd.c
mdtraj/rmsd/_rmsd.pyx
mdtraj/rmsd/include/Munkres.h
mdtraj/rmsd/include/center.h
mdtraj/rmsd/include/euclidean_permutation.hpp
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