pacbio_data_processing.ui package

Submodules

pacbio_data_processing.ui.cl module

This module defines the functions to collect user input from the command line.

pacbio_data_processing.ui.cl.parse_cl_bam_filter()[source]
pacbio_data_processing.ui.cl.parse_cl_sm_analysis()[source]

pacbio_data_processing.ui.common module

pacbio_data_processing.ui.common.parse_user_input(Parser, name, description, options)[source]

pacbio_data_processing.ui.gui module

pacbio_data_processing.ui.gui.custom_Gooey(func=None, **other)[source]
pacbio_data_processing.ui.gui.guiize_options(in_opts)[source]

This functions takes a list of CL options and transforms them into a list suitable for sm-analysis-gui (with Gooey).

pacbio_data_processing.ui.options module

Module contents