Next release
============

1.1.6 (2012-06-26)
==================

Features
-------- 

- Install Cufflinks binaries

Documentation
-------------

- Description and long description added to setup.py

Internal
--------

- Refactoring and increase unit test coverage

1.1.5 (2012-05-18)
==================

Internal
--------

- Fix unit tests now that flux.sh is flux

- Remove import of call from subprocess because the installation of the flux
  does not need it any more

1.1.4 (2012-05-18)
==================

Features
--------

- New installation routine for the new Flux version now using the flux binary
  instead of a flux.sh

1.1.3 (2012-04-20)
==================

Documentation
-------------

- Add a README.txt detailing the motivation, installation and configuration

Bug Fixes
---------

- Fastq files need to be gzipped, but for bam files this does not make sense.
  Removing the error that was raised when encountering a bam file that was
  not gzipped.

1.1.2 (2012-04-12)
==================

Bug Fixes
---------

- Raise an error when files and label/mate_id/pair_id don't have the 
  same length

1.1.1 (2012-04-11)
==================

Bug Fixes
---------

- Raise an error when the pair_id, mate_id, and label attributes of accessions
  are not specified

- Raise an error when a fastq file given in an accession file is not gzipped

1.1 (2012-03-29)
================

Features
--------

- Quick run mode for running one set of reads for predefined species.

1.0 (2012-03-22)
================

- First release
