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pyproject.toml
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tox.ini
.circleci/config.yml
nlisim/__init__.py
nlisim/branch-geometry.hdf5
nlisim/cell.py
nlisim/cli.py
nlisim/config.py
nlisim/coordinates.py
nlisim/diffusion.py
nlisim/geometry.hdf5
nlisim/grid.py
nlisim/module.py
nlisim/molecule.py
nlisim/postprocess.py
nlisim/random.py
nlisim/solver.py
nlisim/state.py
nlisim/util.py
nlisim/validation.py
nlisim.egg-info/PKG-INFO
nlisim.egg-info/SOURCES.txt
nlisim.egg-info/dependency_links.txt
nlisim.egg-info/entry_points.txt
nlisim.egg-info/requires.txt
nlisim.egg-info/top_level.txt
nlisim/geometry/__init__.py
nlisim/geometry/generator.py
nlisim/geometry/math_function.py
nlisim/modules/__init__.py
nlisim/modules/afumigatus.py
nlisim/modules/antitnfa.py
nlisim/modules/csv_writer.py
nlisim/modules/erythrocyte.py
nlisim/modules/est_b.py
nlisim/modules/geometry.py
nlisim/modules/hemoglobin.py
nlisim/modules/hemolysin.py
nlisim/modules/hepcidin.py
nlisim/modules/il10.py
nlisim/modules/il6.py
nlisim/modules/il8.py
nlisim/modules/iron.py
nlisim/modules/lactoferrin.py
nlisim/modules/liver.py
nlisim/modules/macrophage.py
nlisim/modules/mcp1.py
nlisim/modules/mip1b.py
nlisim/modules/mip2.py
nlisim/modules/molecules.py
nlisim/modules/neutrophil.py
nlisim/modules/phagocyte.py
nlisim/modules/pneumocyte.py
nlisim/modules/ros.py
nlisim/modules/state_output.py
nlisim/modules/tafc.py
nlisim/modules/tgfb.py
nlisim/modules/tnfa.py
nlisim/modules/transferrin.py
nlisim/modules/visualization.py
nlisim/oldmodules/.gitignore
nlisim/oldmodules/__init__.py
nlisim/oldmodules/afumigatus.py-deprecated
nlisim/oldmodules/epithelium.py
nlisim/oldmodules/fungus.py
nlisim/oldmodules/macrophage.py
nlisim/oldmodules/molecules.py
nlisim/oldmodules/neutrophil.py
nlisim/oldmodules/phagocyte.py
nlisim/oldmodules/plot.py
nlisim/oldmodules/visualization.py
notebooks/sample.py.ipynb
test/conftest.py
test/test_afumigatus.py-deprecated
test/test_cell.py
test/test_config.py
test/test_diffusion.py
test/test_epithelium.py
test/test_fungus.py
test/test_grid.py
test/test_macrophage.py
test/test_molecules.py
test/test_neutrophil.py
test/test_state.py
test/test_validator.py