Metadata-Version: 1.1
Name: grape.recipe.pipeline
Version: 1.1.14
Summary: A Buildout recipe installing Grape RNA-Seq pipelines
Home-page: http://big.crg.cat/services/grape
Author: Maik Roder
Author-email: maikroeder@gmail.com
License: GPL
Description: The grape.recipe.pipeline package is a Buildout recipe used for
        configuring Grape, a pipeline used for processing and analyzing RNA-Seq data.
        RNA-Seq is a next generation sequencing technology used to sequence cellular RNA.
        To run Grape, you need the read files in Fasta, FastQ or prealigned SAM/BAM formats,
        as well as a genome and a gene transcript annotation. First, Grape does the quality 
        control and then aligns the reads to the genome. The core of Grape is the analysis of
        the transcriptome. Grape quantifies Gene and transcript expression levels, estimates 
        exon inclusion levels, and discovers novel splice forms for you, and includes a powerful
        web application that allows you to seamlessly publish your summary statistics locally 
        or on the Internet. 
        While Grape can run on a standalone machine with modest hardware requirements, it is 
        designed to run in parallel on a computer cluster. Grape comes with its own default 
        mapping and quantification tools, and makes it easy to replace any of these tools with 
        your own, given that they support popular data interchange formats. Grape is being actively
        developed at the CRG, and is used in dozens of projects with massive datasets, 
        like the Illumina Body Map Project (HBM) and the ENCODE project.
Keywords: RNA-Seq pipeline ngs transcriptome bioinformatics
Platform: UNKNOWN
Classifier: Framework :: Buildout
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Programming Language :: Python
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Natural Language :: English
Classifier: Topic :: Software Development :: Build Tools
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Operating System :: POSIX :: Linux
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: System :: Installation/Setup
