{% extends "minibase.html" %} {% block body %}
Successfully loaded {{ cohort | count | pluralize('individual') }}. {# Sex #} {{ cohort.count_males() | was_were }} recorded as male, {{ cohort.count_females() }} as female, and {{ cohort.count_unknown_sex() }} as unknown sex. {# Vital status #} {% if cohort | count == cohort.count_unknown_vital_status() %} No information about individuals' vital status was reported. {% else %} {{ cohort.count_alive() | was_were }} reported to be alive at the time of last encounter, {{ cohort.count_deceased() | was_were }} deceased, and vital status was unreported for {{ cohort.count_unknown_vital_status() | pluralize('individual')}}. {% endif %} {# Disease and age at last encounter #} {{ cohort.count_with_disease_onset() | pluralize('individual')}} had disease onset information and {{ cohort.count_with_age_of_last_encounter() }} had information about the age of last encounter.
n | HPO Term |
---|---|
{{ count['count'] }} | {{ count['label'] }} |
A total of {{ cohort.count_distinct_hpo_terms() }} HPO terms were used to annotated the cohort.
HPO | Count |
---|---|
{{ onset_info.display_label }} | {{ onset_info.count }} |
n | Measurement | ID |
---|---|---|
{{ count['count'] }} | {{ count['label'] }} | {{ count['term_id'] }} |
n | Disease |
---|---|
{{ count['count'] }} | {{ count['label'] }} |
A total of {{ cohort.all_variant_infos() | count | pluralize('unique variant') }} were identified in the cohort. Variants were annotated with respect to {{ transcript_id }}.
n | Variant key | HGVS | Variant Class |
---|---|---|---|
{{ count['count'] }} | {{ count['key'] }} | {{ count['hgvsc'] }} ({{ count['hgvsp'] }}) | {{ count['effects'] }} |
The effects were predicted for {{ transcript_id }}
Variant effect | Count |
---|---|
{{ effect['effect'] }} | {{ effect['count'] }} ({{ effect['percent'] }}%) |
Call this function with transcript to see table with variant effect counts.
{% endif %}