{% extends "base-layout.html" %} {% block css %} {{ super() }} {% endblock %} {% block pdf_export %} {% endblock %} {% macro report_filters() %}

{% endmacro %} {% macro mane_stats_macro() %}

MANE Transcripts coverage report

{% if extras.panel_name %}

Based on gene panel: {{ extras.panel_name }}

{% endif %}
{% for gene_id, samples_stats in mane_coverage_stats|sort(attribute='0') %}
Gene {{ gene_id or samples_stats.gene.hgnc_id }} {% if samples_stats.transcript.mane_select %} MANE Select: {{samples_stats.transcript.mane_select}} {% endif %} {% if samples_stats.transcript.mane_plus_clinical %} MANE Plus Clinical: {{samples_stats.transcript.mane_plus_clinical}} {% endif %}
{% for level, _ in levels.items() %} {% endfor %} {% for data_tuple in samples_stats.stats %} {% for level, _ in levels.items() %} {% endfor %} {% endfor %}
Sample Mean coverageCompleteness {{ level }}x [%]
{{data_tuple[0]}} {{data_tuple[1]|round(2) }}{{ (data_tuple[2][level] * 100)|round(2) }}

{% else %} No MANE transcripts found in database for the provided gene list. {% endfor %}
{% endmacro %} {% block title %} Chanjo2 MANE transcripts coverage overview {% endblock %} {% block content %} {{report_filters() }} {{ mane_stats_macro() }} {% endblock %} {% block js_code %} {{ super() }} {% endblock %}