src.co_tools.get_fasta_file

 1#!/usr/bin/env python
 2import os
 3import sys
 4
 5from .co_fasta import find_fasta_file
 6
 7if os.getenv("CO_LOG").lower() == "true":
 8    from .get_logger import LOGGER
 9
10    log = LOGGER
11else:
12    import logging
13
14    log = logging.getLogger(__name__)
15
16
17def main(argv=sys.argv):
18    if len(argv) == 1:
19        log.warning(
20            "You failed to provide a search directory."
21            + " Will continue by searching in ../data"
22        )
23        print(find_fasta_file("../data"))
24        return 0
25    else:
26        log.info(f"Input dir to search for fasta file: {sys.argv[1]}")
27        print(find_fasta_file(sys.argv[1]))
28        return 0
29
30
31if __name__ == "__main__":
32    sys.exit(main(sys.argv))
def main( argv=['/home/zappuf/.local/bin/pdoc', 'src/co_tools/', '-o', 'docs/']):
18def main(argv=sys.argv):
19    if len(argv) == 1:
20        log.warning(
21            "You failed to provide a search directory."
22            + " Will continue by searching in ../data"
23        )
24        print(find_fasta_file("../data"))
25        return 0
26    else:
27        log.info(f"Input dir to search for fasta file: {sys.argv[1]}")
28        print(find_fasta_file(sys.argv[1]))
29        return 0