Index

A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X

A

adaptiveHistEstFun() (in module Py3DFreeHandUS.particle_filter)
adaptiveTemplateEstFun() (in module Py3DFreeHandUS.particle_filter)
adjustUSTimeVector() (Py3DFreeHandUS.process.Process method)
alignUSImages() (Py3DFreeHandUS.process.Process method)
alignUSImages_old() (Py3DFreeHandUS.process.Process method)
arm01ConstVelEstFun() (in module Py3DFreeHandUS.particle_filter)
arm01ConstVelFun() (in module Py3DFreeHandUS.particle_filter)
arr2aviMPY() (in module Py3DFreeHandUS.converters)
arr2aviOCV() (in module Py3DFreeHandUS.converters)
arr2dcm() (in module Py3DFreeHandUS.converters)
arr2seqFile() (in module Py3DFreeHandUS.converters)
autoCreatePoints() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
avi2dcm() (in module Py3DFreeHandUS.converters)

B

bhattDistObsFun() (in module Py3DFreeHandUS.particle_filter)

C

calcaneusPose() (in module Py3DFreeHandUS.kine)
calcaneusPoseWithClusterSVD() (in module Py3DFreeHandUS.kine)
calculateConvPose() (Py3DFreeHandUS.process.Process method)
calculateDA() (in module Py3DFreeHandUS.calib)
calculateDevicesTimeDelay() (Py3DFreeHandUS.process.Process method)
calculatePoseForUSImages() (Py3DFreeHandUS.process.Process method)
calculatePoseForUSProbe() (Py3DFreeHandUS.process.Process method)
calculateProbeCalibrationAccuracy() (Py3DFreeHandUS.process.Process method)
calculateProbeCalibrationPrecision() (Py3DFreeHandUS.process.Process method)
calculateRA() (in module Py3DFreeHandUS.calib)
calculateRP() (in module Py3DFreeHandUS.calib)
calculateStylusTipInCluster() (in module Py3DFreeHandUS.kine)
calculateTimeDelayXCorr() (in module Py3DFreeHandUS.calib)
calculateVoxelArrayDimensions() (Py3DFreeHandUS.process.Process method)
calcVelocityLee2008() (in module Py3DFreeHandUS.tracking)
calib (module)
calibrateProbe() (Py3DFreeHandUS.process.Process method)
CD2() (in module Py3DFreeHandUS.image_utils)
changedInd() (Py3DFreeHandUS.segment.ViewerUI method)
(Py3DFreeHandUS.segment.ViewerWithFeaturesUI method)
changedKerSizeCan() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedKerSizeDilH() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedKerSizeDilV() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedMaxLineGap() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedMinLineLength() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedThCan1() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedThCan2() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedThHou() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedThI() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
changedType() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
changedWidth() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
changeMarkersReferenceFrame() (in module Py3DFreeHandUS.kine)
clearLine() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
clearMask() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
clearPoints() (Py3DFreeHandUS.segment.OptsPointsUI method)
click() (Py3DFreeHandUS.segment.OptsPointsUI method)
(Py3DFreeHandUS.segment.SegmentUI method)
closeViewer() (Py3DFreeHandUS.segment.ViewerUI method)
collinearNPointsStylusFun() (in module Py3DFreeHandUS.kine)
composeRotoTranslMatrix() (in module Py3DFreeHandUS.kine)
converters (module)
creatCalibMatrix() (in module Py3DFreeHandUS.calib)
createCalibEquations() (in module Py3DFreeHandUS.calib)
createCalibExpressionsForMaxNCC() (in module Py3DFreeHandUS.calib)
createCenteredMaskCoords() (in module Py3DFreeHandUS.image_utils)
createClusterTemplate() (in module Py3DFreeHandUS.kine)
createImageCoords() (in module Py3DFreeHandUS.image_utils)
createImageCorners() (in module Py3DFreeHandUS.image_utils)
createRandomInMaskCoords() (in module Py3DFreeHandUS.image_utils)
createRandomSpheresIn3DVA() (in module Py3DFreeHandUS.voxel_array_utils)
createWhiteMask() (in module Py3DFreeHandUS.image_utils)

D

decomposeRotoTranslMatrix() (in module Py3DFreeHandUS.kine)
detectHoughLongestLine() (in module Py3DFreeHandUS.segment)
detectLine() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
detectPoints() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
dot2() (in module Py3DFreeHandUS.kine)
dot3() (in module Py3DFreeHandUS.kine)

E

E() (in module Py3DFreeHandUS.particle_filter)
enhanceMTJForTracking() (in module Py3DFreeHandUS.tracking)
estimateNextState() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
estimateStateFromWeights() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
evalCalibMatrix() (Py3DFreeHandUS.process.Process method)
exportVoxelArraySilhouetteToVTI() (Py3DFreeHandUS.process.Process method)
exportVoxelArraySilhouetteToVTI_old() (Py3DFreeHandUS.process.Process method)
exportVoxelArrayToVTI() (Py3DFreeHandUS.process.Process method)
exportVoxelArrayToVTI_old() (Py3DFreeHandUS.process.Process method)
extractFeatureFromUSImages() (Py3DFreeHandUS.process.Process method)

F

fileLoad() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
(Py3DFreeHandUS.segment.OptsPointsUI method)
(Py3DFreeHandUS.segment.SegmentUI method)
fileSave() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
(Py3DFreeHandUS.segment.OptsPointsUI method)
(Py3DFreeHandUS.segment.SegmentUI method)
fillGaps() (Py3DFreeHandUS.process.Process method)
fillGaps_old() (Py3DFreeHandUS.process.Process method)
findCornersInMask() (in module Py3DFreeHandUS.image_utils)
footPoseISB() (in module Py3DFreeHandUS.kine)
footPoseISBWithClusterSVD() (in module Py3DFreeHandUS.kine)

G

ges() (in module Py3DFreeHandUS.kine)
getAdjustedUSTimeVector() (Py3DFreeHandUS.process.Process method)
getCoordsInConvexHull() (in module Py3DFreeHandUS.voxel_array_utils)
getCubeCoords() (in module Py3DFreeHandUS.voxel_array_utils)
getData() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
(Py3DFreeHandUS.segment.OptsPointsUI method)
(Py3DFreeHandUS.segment.SegmentUI method)
(Py3DFreeHandUS.segment.ViewerWithFeaturesUI method)
getDevicesTimeDelay() (Py3DFreeHandUS.process.Process method)
getEffectParticlesNumber() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
getEstimatedStateFromWeights() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
getImageCornersAs3DPoints() (Py3DFreeHandUS.process.Process method)
getJointAngles() (in module Py3DFreeHandUS.kine)
getKineFiles() (Py3DFreeHandUS.process.Process method)
getPoseForUSImages() (Py3DFreeHandUS.process.Process method)
getPredictedParticles() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
getProbeCalibrationAccuracy() (Py3DFreeHandUS.process.Process method)
getProbeCalibrationData() (Py3DFreeHandUS.process.Process method)
getProbeCalibrationPrecision() (Py3DFreeHandUS.process.Process method)
getSphereCoords() (in module Py3DFreeHandUS.voxel_array_utils)
getTipData() (Py3DFreeHandUS.kine.Stylus method)
getUpdatedParticleWeights() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
getUSFiles() (Py3DFreeHandUS.process.Process method)
getVersor() (in module Py3DFreeHandUS.kine)
getVoxelArrayPose() (Py3DFreeHandUS.process.Process method)
getVoxelPhysicalSize() (Py3DFreeHandUS.process.Process method)

H

histogramsSimilarity() (in module Py3DFreeHandUS.image_utils)

I

idx2xyz() (in module Py3DFreeHandUS.voxel_array_utils)
image_utils (module)
initRandParticlesInBoxFun() (in module Py3DFreeHandUS.particle_filter)
initVoxelArray() (Py3DFreeHandUS.process.Process method)
initVoxelArray_old() (Py3DFreeHandUS.process.Process method)
interpSignals() (in module Py3DFreeHandUS.kine)
inv2() (in module Py3DFreeHandUS.kine)
inverseTransformSampling() (in module Py3DFreeHandUS.particle_filter)

K

kine (module)

L

lcm() (in module Py3DFreeHandUS.math_utils)
lcmm() (in module Py3DFreeHandUS.math_utils)

M

markersClusterFun() (in module Py3DFreeHandUS.kine)
MaskImageUI (class in Py3DFreeHandUS.segment)
matchTemplate() (in module Py3DFreeHandUS.image_utils)
math_utils (module)
MatrixOfMatrixSymbol() (in module Py3DFreeHandUS.calib)
maximizeNCC() (in module Py3DFreeHandUS.calib)
maximizeNCCcy() (in module Py3DFreeHandUS.calib)
maximizeNCCfast() (in module Py3DFreeHandUS.calib)
maximizeNCCint() (in module Py3DFreeHandUS.calib)
ML() (in module Py3DFreeHandUS.particle_filter)
modeChange() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
MTJlengths() (in module Py3DFreeHandUS.muscles_analysis)
muscles_analysis (module)

N

NCC() (in module Py3DFreeHandUS.image_utils)
next() (Py3DFreeHandUS.segment.SegmentUI method)
(Py3DFreeHandUS.segment.ViewerUI method)
(Py3DFreeHandUS.segment.ViewerWithFeaturesUI method)
nparray2vtkImageData() (in module Py3DFreeHandUS.voxel_array_utils)

O

OptsMaskImageUI (class in Py3DFreeHandUS.segment)
OptsPointsHoughUI (class in Py3DFreeHandUS.segment)
OptsPointsUI (class in Py3DFreeHandUS.segment)

P

particle_filter (module)
ParticleFilter (class in Py3DFreeHandUS.particle_filter)
pca() (in module Py3DFreeHandUS.kine)
pixelData2grey() (in module Py3DFreeHandUS.image_utils)
predict() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
prev() (Py3DFreeHandUS.segment.SegmentUI method)
(Py3DFreeHandUS.segment.ViewerUI method)
(Py3DFreeHandUS.segment.ViewerWithFeaturesUI method)
Process (class in Py3DFreeHandUS.process)
process (module)
Py3DFreeHandUS (module)
Py3DFreeHandUS.calib (module)
Py3DFreeHandUS.converters (module)
Py3DFreeHandUS.image_utils (module)
Py3DFreeHandUS.kine (module)
Py3DFreeHandUS.math_utils (module)
Py3DFreeHandUS.muscles_analysis (module)
Py3DFreeHandUS.particle_filter (module)
Py3DFreeHandUS.process (module)
Py3DFreeHandUS.segment (module)
Py3DFreeHandUS.tracking (module)
Py3DFreeHandUS.voxel_array_utils (module)

R

R2zxy() (in module Py3DFreeHandUS.kine)
readC3D() (in module Py3DFreeHandUS.kine)
readDICOM() (in module Py3DFreeHandUS.image_utils)
readFeaturesFile() (in module Py3DFreeHandUS.segment)
readImage() (in module Py3DFreeHandUS.image_utils)
readSITK() (in module Py3DFreeHandUS.image_utils)
reconstructTip() (Py3DFreeHandUS.kine.Stylus method)
resample() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
resampleMarker() (in module Py3DFreeHandUS.kine)
resampleMarkers() (in module Py3DFreeHandUS.kine)
reset() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
(Py3DFreeHandUS.segment.OptsPointsUI method)
(Py3DFreeHandUS.segment.SegmentUI method)
rgb2grey() (in module Py3DFreeHandUS.image_utils)
rigidBodySVDFun() (in module Py3DFreeHandUS.kine)
rigidBodyTransformation() (in module Py3DFreeHandUS.kine)
RNCCObsFun() (in module Py3DFreeHandUS.particle_filter)

S

segment (module)
SegmentPointsHoughUI (class in Py3DFreeHandUS.segment)
SegmentPointsUI (class in Py3DFreeHandUS.segment)
SegmentUI (class in Py3DFreeHandUS.segment)
setAdditionalData() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setDataSourceProperties() (Py3DFreeHandUS.process.Process method)
setDevicesTimeDelay() (Py3DFreeHandUS.process.Process method)
setGapFillingParameters() (Py3DFreeHandUS.process.Process method)
setKineFiles() (Py3DFreeHandUS.process.Process method)
setParticles() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setParticleWeights() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setPointsData() (Py3DFreeHandUS.kine.Stylus method)
setProbeCalibrationData() (Py3DFreeHandUS.process.Process method)
setProbEstimModel() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setProbObservModel() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setProbTransModel() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setScaleFactors() (Py3DFreeHandUS.process.Process method)
setState() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setStateEstimatorFromWeightsFun() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
setTipReconstructionFunction() (Py3DFreeHandUS.kine.Stylus method)
setTipReconstructionFunctionArgs() (Py3DFreeHandUS.kine.Stylus method)
setUSFiles() (Py3DFreeHandUS.process.Process method)
setUSImagesAlignmentParameters() (Py3DFreeHandUS.process.Process method)
setValidFramesForVoxelArray() (Py3DFreeHandUS.process.Process method)
setVtkImageDataProperties() (Py3DFreeHandUS.process.Process method)
shankPoseISB() (in module Py3DFreeHandUS.kine)
shankPoseISBWithClusterSVD() (in module Py3DFreeHandUS.kine)
showCurrentIdx() (Py3DFreeHandUS.segment.ViewerUI method)
showData() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
(Py3DFreeHandUS.segment.OptsPointsHoughUI method)
(Py3DFreeHandUS.segment.OptsPointsUI method)
showImage() (Py3DFreeHandUS.segment.ViewerUI method)
showImageQualityStatsPreOF() (in module Py3DFreeHandUS.tracking)
showLine() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)
showMask() (Py3DFreeHandUS.segment.OptsMaskImageUI method)
showPoints() (Py3DFreeHandUS.segment.OptsPointsUI method)
showViewer() (Py3DFreeHandUS.segment.ViewerUI method)
singlePointFeaturesTo3DPointsMatrix() (in module Py3DFreeHandUS.segment)
solveCalibEquations() (in module Py3DFreeHandUS.calib)
Stylus (class in Py3DFreeHandUS.kine)

T

tracking (module)
trackMTJ() (in module Py3DFreeHandUS.tracking)
trackMTJ_gui() (in module Py3DFreeHandUS.tracking)
trackMTJMultiTrackers() (in module Py3DFreeHandUS.tracking)

U

update() (Py3DFreeHandUS.particle_filter.ParticleFilter method)
(Py3DFreeHandUS.segment.ViewerUI method)
updateData() (Py3DFreeHandUS.segment.OptsPointsHoughUI method)

V

vdot2() (in module Py3DFreeHandUS.kine)
ViewerUI (class in Py3DFreeHandUS.segment)
ViewerWithFeaturesUI (class in Py3DFreeHandUS.segment)
voxel_array_utils (module)
VoxelArray3D (class in Py3DFreeHandUS.voxel_array_utils)
VoxelArray3DFrom2DImages (class in Py3DFreeHandUS.voxel_array_utils)
vti2arr() (in module Py3DFreeHandUS.converters)
vti2mat() (in module Py3DFreeHandUS.converters)
vtkImageData2vti() (in module Py3DFreeHandUS.voxel_array_utils)

W

writeC3D() (in module Py3DFreeHandUS.kine)

X

xyz2idx() (in module Py3DFreeHandUS.voxel_array_utils)