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HHpred-related format parsers.
This module defines two HHpred format parsers: HHProfileParser and HHOutputParser. The first one is used to read HMM (*.hhm) files:
>>> HHProfileParser("profile.hhm", "profile.pdb").parse() <ProfileHMM> # ProfileHMM object
while the latter parses HHsearch results files (*.hhr):
>>> HHOutputParser().parse_file("hits.hhr"): <HHpredHitList> # collection of HHpredHit-s
See ProfileHMM, HHpredHitList and HHpredHit from csb.bio.hmm for details. For text serialization of HMM profiles, see HHMFileBuilder in this module.
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HHMFileBuilder Builder for HHpred's hhm files. |
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| HHOutputFormatError | |
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HHOutputParser Parser for HHsearch result (*.hhr) files. |
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| HHProfileFormatError | |
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HHProfileParser A class that is HHpred HMM format aware. |
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HHpredOutputParser Parser for HHsearch result (*.hhr) files. |
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HHpredProfileParser A class that is HHpred HMM format aware. |
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| StructureFormatError | |
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