| Home | Trees | Indices | Help |
|
|---|
|
|
object --+
|
AbstractStructureParser
A base PDB structure format-aware parser. Subclasses must implement
the internal abstract method _parse_header in order to
complete the implementation.
| Nested Classes | |
|
__metaclass__ Metaclass for defining Abstract Base Classes (ABCs). |
|
| Instance Methods | |||
|
|||
|
|||
| csb.core.EnumItem |
|
||
| csb.core.EnumItem |
|
||
| list |
|
||
|
|||
| Structure |
|
||
| Ensemble |
|
||
| str |
|
||
| str |
|
||
| Structure |
|
||
|
Inherited from |
|||
| Static Methods | |||
| AbstractStructureParser |
|
||
| Class Variables | |
__abstractmethods__ =
|
|
| Properties | |
| str |
filename Current input PDB file name |
| AbstractResidueMapper |
mapper Current residue mapping strategy |
|
Inherited from |
|
| Method Details |
x.__init__(...) initializes x; see help(type(x)) for signature
|
A StructureParser factory, which instantiates and returns the proper parser object based on the contents of the PDB file. If the file contains a SEQRES section, RegularStructureParser is returned, otherwise LegacyStructureParser is instantiated. In the latter case LegacyStructureParser will read the sequence data directly from the ATOMs.
|
Try to guess what is the sequence type of a chunk of PDB
|
Try to guess what is the sequence type of a PDB
|
Find all available model identifiers in the structure.
|
Parse and return the Structure of the biological unit (quaternary structure) as annotated by the REMARK 350 BIOMOLECULE record.
|
Parse the specified models in the file and build an Ensemble.
|
Try to parse a PDB
|
Same as
|
Parse and return the Structure with the specified model identifier. If no explicit model is specified, parse the first model in the structure.
|
| Property Details |
filenameCurrent input PDB file name
|
mapperCurrent residue mapping strategy
|
| Home | Trees | Indices | Help |
|
|---|
| Generated by Epydoc 3.0.1 on Fri Dec 27 22:25:20 2013 | http://epydoc.sourceforge.net |