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object --+
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AbstractEntity --+
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Atom
Represents a single atom in space.
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__abstractmethods__ =
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| str |
alternate Alternative location flag |
| float |
bfactor Temperature factor |
| int |
charge Charge |
| enum item |
element Chemical element - a member of ChemElements |
| iterator of AbstractEntity |
items Iterator over all immediate children of the entity |
| str |
name PDB atom name (trimmed) |
| float |
occupancy Occupancy number |
| Residue |
residue Residue instance that owns this atom (if available) |
| int |
serial_number PDB serial number |
| numpy.array |
vector Atom's 3D coordinates (x, y, z) |
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| Method Details |
x.__init__(...) initializes x; see help(type(x)) for signature
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repr(x)
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Extract the coordinates of the specified kind(s) of atoms and return them as a list.
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Apply in place RotationMatrix and translation Vector to all atoms.
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| Property Details |
alternateAlternative location flag
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bfactorTemperature factor
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chargeCharge
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elementChemical element - a member of ChemElements
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itemsIterator over all immediate children of the entity
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namePDB atom name (trimmed)
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occupancyOccupancy number
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residueResidue instance that owns this atom (if available)
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serial_numberPDB serial number
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vectorAtom's 3D coordinates (x, y, z)
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