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object --+
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core.AbstractContainer --+
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core.AbstractNIContainer --+
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object --+ |
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AbstractEntity --+
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Structure
Represents a single model of a PDB 3-Dimensional molecular structure. Provides access to the Chain objects, contained in the model:
>>> structure['A'] <Chain A: Protein> >>> structure.chains['A'] <Chain A: Protein> >>> structure.items <iterator of Chain-s>
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__abstractmethods__ =
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accession Accession number |
| StructureChainsTable |
chains Access chains by their chain identifiers |
| Chain or None |
first_chain The first Chain in the structure (if available) |
| iterator of AbstractEntity |
items Iterator over all immediate children of the entity |
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model_id Model ID |
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resolution Resolution in Angstroms |
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| Method Details |
x.__init__(...) initializes x; see help(type(x)) for signature
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repr(x)
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A Structure factory, which instantiates and returns a new Structure with chain as deep cpoy of chain |
Dump the structure in FASTA format.
Deprecated: this method will be removed soon. Use csb.bio.sequence.ChainSequence.create instead |
Dump the whole structure in PDB format.
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accessionAccession number
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chainsAccess chains by their chain identifiers
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first_chainThe first Chain in the structure (if available) |
itemsIterator over all immediate children of the entity
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model_idModel ID
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resolutionResolution in Angstroms
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