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Collection of sequence alignment algorithms.
Note: The classes in this module have been optimized for performance. Think twice before switching a field to a generally nicer property access, because it turns out that these things often add significant constants to the running time of a dynamic programming algorithm.
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AbstractAlignmentAlgorithm Base class for all sequence alignment algorithms. |
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AbstractScoringMatrix Defines a pairwise sequence alignment scoring function. |
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AlignmentResult Represents a pairwise sequence alignment result. |
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GlobalAlignmentAlgorithm Needleman-Wunsch global sequence alignment. |
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IdentityMatrix Simple identity-based scoring matrix. |
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LocalAlignmentAlgorithm Smith-Waterman local sequence alignment. |
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| ResidueNotFoundError | |
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SimilarityMatrix Similarity scoring matrix. |
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