Describes the secondary structure of a chain. Provides an index-based
access to the secondary structure elements of the chain.
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__init__(self,
string=None,
conf_string=None)
x.__init__(...) initializes x; see help(type(x)) for signature |
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int
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tuple of SecondaryStructureElements
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at(self,
rank,
type=None)
Returns:
all secondary structure elements covering the specifid position |
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float
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tuple of SecondaryStructureElements
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scan(self,
start,
end,
filter=None,
loose=True,
cut=True)
Get all secondary structure elements within the specified [start,
end] region. |
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SecondaryStructure
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str
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to_string(self,
chain_length=None)
Get back the string representation of the secondary structure. |
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to_three_state(self)
Convert to three-state secondary structure (Helix, Strand, Coil). |
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Inherited from core.BaseCollectionContainer:
__bool__,
__contains__,
__getitem__,
__iter__,
__len__,
__nonzero__,
__repr__
Inherited from object:
__delattr__,
__format__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__setattr__,
__sizeof__,
__subclasshook__
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