{% extends "bootstrap_global.html" %} {% from "clinvar/components.html" import condition_identifiers, hgvs_choices, observations %} {% block css %} {{ super() }} {% endblock %} {% block head %} {{ super() }} {% endblock head %} {% block content %} {% if variant_data.var_obj.category in ["snv", "cancer"]%} {% set var_category = 'snv' %} {% else %} {% set var_category = 'sv' %} {% endif %}
  • Start
  • Oncogenicity classification
  • Observation Data
  • Variant Details
  • Associated conditions
{{ variant_data.var_form.csrf_token }}
ClinVar oncogenic submission form

Use this form to add a variant to an oncogenicity submission object. The submission will be formatted as a JSON document, ready to be sent to ClinVar via their API.

Oncogenicity classification

{{ variant_data.var_form.onc_classification.label }} {{ variant_data.var_form.onc_classification }}


{{ variant_data.var_form.last_evaluated.label }} {{ variant_data.var_form.last_evaluated }}
{{ variant_data.var_form.clinsig_comment.label }} * {{ variant_data.var_form.clinsig_comment(rows=4, class="form-control") }}


{{ variant_data.var_form.assertion_method_cit_db.label }} {{ variant_data.var_form.assertion_method_cit_db }} ? *
{{ variant_data.var_form.assertion_method_cit_id.label( id="citation_tooltip", **{'data-bs-toggle': 'tooltip', 'title': 'Original tooltip text'} ) }} {{ variant_data.var_form.assertion_method_cit_id }}
Variant Details {{variant_data.var_form.gene_symbol.label(class="fw-bold, text-dark")}} ? {{variant_data.var_form.gene_symbol(class="bg-white")}} {% if variant_data.var_obj.category == 'cancer' %} {{ variant_data.var_form.chromosome() }} {{ variant_data.var_form.start() }} {{ variant_data.var_form.stop() }} {{ variant_data.var_form.alt() }} {{ variant_data.var_form.assembly() }} {% endif %} {{ hgvs_choices(variant_data.var_form.tx_hgvs) }}

Associated Conditions

The condition must be provided as a database identifier. Assigning a condition name if the database identifier can't be found is not yet supported.

{{ condition_identifiers(variant_data.var_form) }}
Observation Data {{ observations(variant_data.cdata_forms, variant_data.var_obj.category) }}
{% endblock %} {% block scripts %} {{ super() }} {% include "clinvar/scripts.html" %} {% endblock %}