{% extends "layout.html" %} {% from "overview/institute_sidebar.html" import institute_actionbar %} {% from "clinvar/components.html" import update_submission_status_form %} {% block title %} {{ super() }} - {{ institute.display_name }} {% endblock %} {% block top_nav %} {{ super() }} {% endblock %} {% macro submissions_macro(submissions) %}

Oncogenicity submissions


{% if submissions %}
{% for status in ['open', 'closed', 'submitted'] %} {% for submission in submissions|sort(attribute='status') %} {% if submission.status==status %} {{ submission_panel(submission) }} {% endif %} {% endfor %} {% endfor %}
{% else %}

No ClinVar submissions found. You can create one by choosing one or more pinned variants on a case page and clicking the button "Submit to ClinVar".

{% endif %}
{% endmacro %} {% macro submission_panel(subm_obj) %}

{{ update_submission_status_form(institute, subm_obj) }}
{% if subm_obj.status == 'open' and show_submit %} {{ submit_modal() }} {% endif %} {% if subm_obj.status == 'submitted' %} {{ action_modal("status", subm_obj._id) }} {{ action_modal("remove", subm_obj._id) }} {% endif %}

Variant data:

{% if subm_obj.oncogenicitySubmission and subm_obj.oncogenicitySubmission | length > 0 %} {% for onc_var in subm_obj.oncogenicitySubmission %} {% endfor %}
Case Variant Classification Last evaluated Comment Citation Variant Associated conditions Observations
{{onc_var.case_name}} link {{onc_var.oncogenicityClassification.oncogenicityClassificationDescription}} {{onc_var.oncogenicityClassification.dateLastEvaluated}} {{onc_var.oncogenicityClassification.comment}} {{render_dict_array(onc_var.oncogenicityClassification.citation)}} {{render_dict_array(onc_var.variantSet.variant)}} {{render_dict_array(onc_var.conditionSet.condition)}} {{render_dict_array(onc_var.observedIn)}}
{% else %}

This submission is open but has no variants yet.

{% endif %}
{% endmacro %} {% macro render_dict_array(list_of_dicts) %} {% for item in list_of_dicts %} {% for key, value in item.items() %} {{key}} : {{value}}
{% endfor %} {% endfor %} {% if list_of_dicts|length > 1%}
{% endif %} {% endmacro %} {% macro action_modal(action_type, subm_id) %} {% endmacro %} {% macro submit_modal() %} {% endmacro %} {% block content_main %}
{{ institute_actionbar(institute, "shared") }}
{{ submissions_macro(submissions) }}
{% endblock %} {% block scripts %} {{ super() }} {% endblock %}