{% extends "layout.html" %} {% from "utils.html" import comments_table, pedigree_panel %} {% from "variant/buttons.html" import reviewer_button%} {% from "variant/gene_disease_relations.html" import inheritance_badge %} {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general %} {% from "variants/utils.html" import callers_cell, cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - STR variants {% endblock %} {% block css %} {{ super() }} {{ external_stylesheets() }} {% endblock %} {% block top_nav %} {{ super() }}
Index | Repeat locus | Ref RU | Est size | Ref size | Qual | Status | Genotype | Chr. | Position |
---|---|---|---|---|---|---|---|---|---|
{{ cell_rank(variant, institute, case, form, manual_rank_options) }} | {{ str_locus_info(variant) }} | {% if variant.str_display_ru %}{{variant.str_display_ru | truncate(12, True)}} {% elif variant.str_ru %}{{ variant.str_ru | truncate(12, True) }} {% else %}{{ variant.reference | truncate(12, True) }}{% endif %} | {{ variant.str_mc }} | {{ variant.str_ref or "." }} | {{ callers_cell(variant) }} | {{ str_status(variant) }} | {% for sample in variant.samples %}
{% if sample.genotype_call != "./." %}
{{ sample.display_name }}
{{ sample.genotype_call }}
|
{{ variant.chromosome }} | {{ variant.position|human_longint|safe }} {{ reviewer_button(case,variant,case_groups,institute._id) }} {% if case.bam_files %} IGV gDNA {% else %} {% endif %} |
No matching variants |