src.co_tools.get_read_pattern

 1#!/usr/bin/env python
 2import os
 3import sys
 4
 5from .co_fastq import get_read_pattern
 6
 7if os.getenv("CO_LOG").lower() == "true":
 8    from .get_logger import LOGGER
 9
10    log = LOGGER
11else:
12    import logging
13
14    log = logging.getLogger(__name__)
15
16
17def main(argv=sys.argv):
18    log.debug(f"args: {sys.argv}")
19    if len(argv) == 1:
20        sys.exit(log.error("You failed to provide a filename and direction"))
21    elif len(argv) == 2:
22        print(get_read_pattern(argv[1]))
23        return 0
24    print(get_read_pattern(argv[1], argv[2]))
25    return 0
26
27
28if __name__ == "__main__":
29    log.debug(f"args: {sys.argv}")
30    sys.exit(main(sys.argv))
def main( argv=['/home/zappuf/.local/bin/pdoc', 'src/co_tools/', '-o', 'docs/']):
18def main(argv=sys.argv):
19    log.debug(f"args: {sys.argv}")
20    if len(argv) == 1:
21        sys.exit(log.error("You failed to provide a filename and direction"))
22    elif len(argv) == 2:
23        print(get_read_pattern(argv[1]))
24        return 0
25    print(get_read_pattern(argv[1], argv[2]))
26    return 0