{% extends 'sharedTemplates/base.html' %} {% block title %}RSS{% endblock %} {% block body %}
Information

This panel shows the identification of RSS (Recombination Signal Sequences) motifs and their match frequencies across V(D)J segments. The bar chart displays FIMO scan results based on a discovered MEME motif, comparing known and novel gene segments.

  • True: The motif was found with significant match (based on p-value and q-value)
  • False: No significant match to the motif was found
Below, each sequence logo shows the conserved motif pattern across aligned hits. The table lists individual FIMO matches with:
  • Score: Match quality to the motif
  • p-value / q-value: Statistical significance
  • Matched sequence: Exact sequence matching the motif

RSS identification and sequence logos

{% if rss_plot %} {{ rss_plot | safe }} {% else %}

No data found.

{% endif %}
{% if rss_data %} {% for name, data in rss_data.items() %}

{{ name }}

Meme Logo Show fimo output
{% if data.fimo_data %}
{% for header in data.fimo_data[0].keys() %} {% endfor %} {% for row in data.fimo_data %} {% for value in row.values() %} {% endfor %} {% endfor %}
{{ header }}
{{ value }}
{% else %}

No FIMO data available.

{% endif %}
{% endfor %} {% else %}

No MEME data available.

{% endif %}
{% endblock %}