{% extends 'sharedTemplates/base.html' %} {% block title %}Add novel sequences{% endblock %} {% block body %}
{% with messages = get_flashed_messages(with_categories=true) %} {% if messages %} {% for category, message in messages %} {% endfor %} {% endif %} {% endwith %}
Information

This panel allows you to explore novel gene segments discovered across multiple samples, and optionally add them to the segment library. The bar chart shows how many novel segments are supported by a given number of samples. Segments found in more than 2 samples are generally considered reliable and are more likely to represent true novel alleles, rather than sequencing or assembly artifacts. The table below lists each novel segment with:

  • Reference: Assigned name of the novel segment
  • % identity: Sequence similarity to the closest known reference
  • SNPs / Insertions / Deletions: Number of differences from the closest reference
  • Found in N Samples: Number of samples in which the segment was found
Use the filter to select segments supported by a minimum number of samples, then select entries and click “Add to library” to include them to the library.

Add novel segments

{% if plot_count_distribution %} {{ plot_count_distribution|safe }} {% endif %}
All novel segments filtered based on this number
{% if pivot_data %} {% for row in pivot_data %} {% endfor %}
Select Reference % identity SNPs Insertions Deletions Found in N Samples
{{ row["Short name"] }} {{ row["% identity"] }} {{ row["SNPs"] }} {{ row["Insertions"] }} {{ row["Deletions"] }} {{ row["Count"] }}
{% endif %}
{% endblock %}