{% extends 'sharedTemplates/base.html' %} {% block title %}MSA {% endblock %} {% block body %}
This panel displays a multiple sequence alignment (MSA) of a selected gene segment across multiple samples.
Each row represents a sample or reference sequence. The alignment uses symbols to highlight differences relative to the reference:
Ref: A C G T A
Seg: - - - - -
Ref: A C G T A
Seg: - G - - -
Ref: A C G T A
Seg: - - * - -
Ref: A C - T A
Seg: - - G - -
{% for q_chunk, match_line in zip(query_chunks, match_lines) %} {{ reference }}{{ q_chunk }} {{ allele }}{{ match_line }} {% endfor %}
No alignment data available.
{% endif %}