Index

_

__abstractmethods__ (WORC.featureprocessing.Relief.SelectMulticlassRelief attribute) (WORC.featureprocessing.SelectGroups.SelectGroups attribute) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute) __dict__ (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute) __init__() (WORC.classification.AdvancedSampler.AdvancedSampler method) (WORC.WORC.Tools method) (WORC.WORC.WORC method) (WORC.classification.AdvancedSampler.discrete_uniform method) (WORC.classification.AdvancedSampler.exp_uniform method) (WORC.classification.AdvancedSampler.log_uniform method) (WORC.classification.estimators.RankedSVM method) (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method) (WORC.processing.classes.switch method) (WORC.tools.Elastix.Elastix method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method) __iter__() (WORC.classification.AdvancedSampler.AdvancedSampler method) (WORC.processing.classes.switch method) __len__() (WORC.classification.AdvancedSampler.AdvancedSampler method) __module__ (WORC.addexceptions.WORCAssertionError attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute) (WORC.addexceptions.WORCError attribute) (WORC.addexceptions.WORCIOError attribute) (WORC.addexceptions.WORCIndexError attribute) (WORC.addexceptions.WORCKeyError attribute) (WORC.addexceptions.WORCNotImplementedError attribute) (WORC.addexceptions.WORCTypeError attribute) (WORC.addexceptions.WORCValueError attribute) (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.classification.estimators.RankedSVM attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.featureprocessing.Relief.SelectMulticlassRelief attribute) (WORC.featureprocessing.SelectGroups.SelectGroups attribute) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute)

__weakref__ (WORC.addexceptions.WORCError attribute) (WORC.WORC.Tools attribute) (WORC.WORC.WORC attribute) (WORC.addexceptions.WORCIOError attribute) (WORC.classification.AdvancedSampler.AdvancedSampler attribute) (WORC.classification.AdvancedSampler.discrete_uniform attribute) (WORC.classification.AdvancedSampler.exp_uniform attribute) (WORC.classification.AdvancedSampler.log_uniform attribute) (WORC.featureprocessing.Imputer.Imputer attribute) (WORC.processing.classes.switch attribute) (WORC.tools.Elastix.Elastix attribute) (WORC.tools.Evaluate.Evaluate attribute) (WORC.tools.Slicer.Slicer attribute) (WORC.tools.Transformix.Transformix attribute)

A

add_tools() (WORC.WORC.WORC method)

addchangeorder() (WORC.tools.Elastix.Elastix method) AdvancedSampler (class in WORC.classification.AdvancedSampler)

B

bbox_2D() (in module WORC.plotting.plot_images) build() (WORC.WORC.WORC method)

build_testing() (WORC.WORC.WORC method) build_training() (WORC.WORC.WORC method)

C

check_scoring() (in module WORC.classification.metrics) compute_confidence() (in module WORC.plotting.compute_CI) compute_confidence_logit() (in module WORC.plotting.compute_CI) construct_classifier() (in module WORC.classification.construct_classifier) construct_SVM() (in module WORC.classification.construct_classifier) count_parameters() (in module WORC.plotting.plot_barchart) create_bbox() (WORC.tools.Elastix.Elastix method)

create_network() (in module WORC.resources.fastr_tests.CalcFeatures_test) (WORC.tools.Elastix.Elastix method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) create_param_grid() (in module WORC.classification.construct_classifier)

D

defaultconfig() (WORC.WORC.WORC method)

discrete_uniform (class in WORC.classification.AdvancedSampler)

E

Elastix (class in WORC.tools.Elastix) Evaluate (class in WORC.tools.Evaluate) example() (in module WORC.plotting.plot_ranked_scores) execute() (WORC.tools.Elastix.Elastix method) (WORC.WORC.WORC method) (WORC.tools.Evaluate.Evaluate method) (WORC.tools.Slicer.Slicer method) (WORC.tools.Transformix.Transformix method)

exp_uniform (class in WORC.classification.AdvancedSampler) ExtractNLargestBlobsn() (in module WORC.processing.ExtractNLargestBlobsn)

F

findlabeldata() (in module WORC.processing.label_processing) fit() (WORC.classification.estimators.RankedSVM method) (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)

G

generate_boxplots() (in module WORC.plotting.plot_boxplot)

getparametermap() (WORC.tools.Elastix.Elastix method)

I

ICC() (in module WORC.classification.metrics) ICC_anova() (in module WORC.classification.metrics)

Imputer (class in WORC.featureprocessing.Imputer) is_empty() (in module WORC.classification.RankedSVM)

L

linstretch() (in module WORC.plotting.linstretch) load_config() (in module WORC.IOparser.config_io_classifier) (in module WORC.IOparser.config_WORC) (in module WORC.IOparser.config_preprocessing) (in module WORC.IOparser.config_segmentix) load_config_XNAT() (in module WORC.processing.label_processing)

load_data() (in module WORC.IOparser.file_io) load_label_csv() (in module WORC.processing.label_processing) load_label_txt() (in module WORC.processing.label_processing) load_label_XNAT() (in module WORC.processing.label_processing) load_labels() (in module WORC.processing.label_processing) log_uniform (class in WORC.classification.AdvancedSampler)

M

main() (in module WORC.plotting.plot_barchart) (in module WORC.plotting.plot_ROC) (in module WORC.plotting.plot_SVM) (in module WORC.plotting.plot_boxplot) (in module WORC.plotting.plot_ranked_scores) (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test)

match() (WORC.processing.classes.switch method) multi_class_auc() (in module WORC.classification.metrics) multi_class_auc_score() (in module WORC.classification.metrics) multi_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)

N

neg_dual_func() (in module WORC.classification.RankedSVM)

P

pairwise_auc() (in module WORC.classification.metrics) paracheck() (in module WORC.plotting.plot_barchart) performance_multilabel() (in module WORC.classification.metrics) performance_singlelabel() (in module WORC.classification.metrics) plot_barchart() (in module WORC.plotting.plot_barchart) plot_bars() (in module WORC.plotting.plot_barchart) plot_im_and_overlay() (in module WORC.plotting.plot_images) plot_ranked_images() (in module WORC.plotting.plot_ranked_scores)

plot_ranked_percentages() (in module WORC.plotting.plot_ranked_scores) plot_ranked_posteriors() (in module WORC.plotting.plot_ranked_scores) plot_ranked_scores() (in module WORC.plotting.plot_ranked_scores) plot_ROC() (in module WORC.plotting.plot_ROC) plot_ROC_CIc() (in module WORC.plotting.plot_ROC) plot_single_ROC() (in module WORC.plotting.plot_ROC) plot_SVM() (in module WORC.plotting.plot_SVM) predict() (WORC.classification.estimators.RankedSVM method) predict_proba() (WORC.classification.estimators.RankedSVM method)

R

RankedSVM (class in WORC.classification.estimators) RankSVM_test() (in module WORC.classification.RankedSVM) RankSVM_test_original() (in module WORC.classification.RankedSVM) RankSVM_train() (in module WORC.classification.RankedSVM)

RankSVM_train_old() (in module WORC.classification.RankedSVM) ROC_thresholding() (in module WORC.plotting.plot_ROC) rvs() (WORC.classification.AdvancedSampler.discrete_uniform method) (WORC.classification.AdvancedSampler.exp_uniform method) (WORC.classification.AdvancedSampler.log_uniform method)

S

SelectGroups (class in WORC.featureprocessing.SelectGroups) SelectIndividuals (class in WORC.featureprocessing.SelectIndividuals) SelectMulticlassRelief (class in WORC.featureprocessing.Relief) set() (WORC.tools.Evaluate.Evaluate method) (WORC.WORC.WORC method) (WORC.tools.Slicer.Slicer method) single_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method) sink_data() (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test)

Slicer (class in WORC.tools.Slicer) slicer() (in module WORC.plotting.plot_images) source_data() (in module WORC.resources.fastr_tests.CalcFeatures_test) (in module WORC.resources.fastr_tests.elastix_test) (in module WORC.resources.fastr_tests.segmentix_test) StatisticalTestThreshold (class in WORC.featureprocessing.StatisticalTestThreshold) switch (class in WORC.processing.classes)

T

Tools (class in WORC.WORC) transform() (WORC.featureprocessing.Imputer.Imputer method) (WORC.featureprocessing.Relief.SelectMulticlassRelief method) (WORC.featureprocessing.SelectGroups.SelectGroups method) (WORC.featureprocessing.SelectIndividuals.SelectIndividuals method) (WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)

Transformix (class in WORC.tools.Transformix)

W

WORC (class in WORC.WORC) WORC.__init__ (module) WORC.addexceptions (module) WORC.classification.AdvancedSampler (module) WORC.classification.construct_classifier (module) WORC.classification.estimators (module) WORC.classification.metrics (module) WORC.classification.RankedSVM (module) WORC.featureprocessing (module) WORC.featureprocessing.Imputer (module) WORC.featureprocessing.Relief (module) WORC.featureprocessing.SelectGroups (module) WORC.featureprocessing.SelectIndividuals (module) WORC.featureprocessing.StatisticalTestThreshold (module) WORC.IOparser.config_io_classifier (module) WORC.IOparser.config_preprocessing (module) WORC.IOparser.config_segmentix (module) WORC.IOparser.config_WORC (module) WORC.IOparser.file_io (module) WORC.plotting.compute_CI (module) WORC.plotting.linstretch (module) WORC.plotting.plot_barchart (module) WORC.plotting.plot_boxplot (module)

WORC.plotting.plot_images (module) WORC.plotting.plot_ranked_scores (module) WORC.plotting.plot_ROC (module) WORC.plotting.plot_SVM (module) WORC.processing.classes (module) WORC.processing.ExtractNLargestBlobsn (module) WORC.processing.label_processing (module) WORC.resources.fastr_tests.CalcFeatures_test (module) WORC.resources.fastr_tests.elastix_test (module) WORC.resources.fastr_tests.segmentix_test (module) WORC.tools.Elastix (module) WORC.tools.Evaluate (module) WORC.tools.Slicer (module) WORC.tools.Transformix (module) WORC.WORC (module) WORCAssertionError WORCError WORCIndexError WORCIOError WORCKeyError WORCNotImplementedError WORCTypeError WORCValueError