WORC
3.0.0
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User Manual
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Changelog
WORC Package
WORC
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Index
Index
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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T
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W
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__abstractmethods__ (WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
__dict__ (WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
__init__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.WORC.Tools method)
(WORC.WORC.WORC method)
(WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
(WORC.classification.estimators.RankedSVM method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.processing.classes.switch method)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
__iter__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.processing.classes.switch method)
__len__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
__module__ (WORC.addexceptions.WORCAssertionError attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.addexceptions.WORCError attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.addexceptions.WORCIndexError attribute)
(WORC.addexceptions.WORCKeyError attribute)
(WORC.addexceptions.WORCNotImplementedError attribute)
(WORC.addexceptions.WORCTypeError attribute)
(WORC.addexceptions.WORCValueError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.estimators.RankedSVM attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
__weakref__ (WORC.addexceptions.WORCError attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
A
add_tools() (WORC.WORC.WORC method)
addchangeorder() (WORC.tools.Elastix.Elastix method)
AdvancedSampler (class in WORC.classification.AdvancedSampler)
B
bbox_2D() (in module WORC.plotting.plot_images)
build() (WORC.WORC.WORC method)
build_testing() (WORC.WORC.WORC method)
build_training() (WORC.WORC.WORC method)
C
check_scoring() (in module WORC.classification.metrics)
compute_confidence() (in module WORC.plotting.compute_CI)
compute_confidence_logit() (in module WORC.plotting.compute_CI)
construct_classifier() (in module WORC.classification.construct_classifier)
construct_SVM() (in module WORC.classification.construct_classifier)
count_parameters() (in module WORC.plotting.plot_barchart)
create_bbox() (WORC.tools.Elastix.Elastix method)
create_network() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
create_param_grid() (in module WORC.classification.construct_classifier)
D
defaultconfig() (WORC.WORC.WORC method)
discrete_uniform (class in WORC.classification.AdvancedSampler)
E
Elastix (class in WORC.tools.Elastix)
Evaluate (class in WORC.tools.Evaluate)
example() (in module WORC.plotting.plot_ranked_scores)
execute() (WORC.tools.Elastix.Elastix method)
(WORC.WORC.WORC method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
exp_uniform (class in WORC.classification.AdvancedSampler)
ExtractNLargestBlobsn() (in module WORC.processing.ExtractNLargestBlobsn)
F
findlabeldata() (in module WORC.processing.label_processing)
fit() (WORC.classification.estimators.RankedSVM method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
G
generate_boxplots() (in module WORC.plotting.plot_boxplot)
getparametermap() (WORC.tools.Elastix.Elastix method)
I
ICC() (in module WORC.classification.metrics)
ICC_anova() (in module WORC.classification.metrics)
Imputer (class in WORC.featureprocessing.Imputer)
is_empty() (in module WORC.classification.RankedSVM)
L
linstretch() (in module WORC.plotting.linstretch)
load_config() (in module WORC.IOparser.config_io_classifier)
(in module WORC.IOparser.config_WORC)
(in module WORC.IOparser.config_preprocessing)
(in module WORC.IOparser.config_segmentix)
load_config_XNAT() (in module WORC.processing.label_processing)
load_data() (in module WORC.IOparser.file_io)
load_label_csv() (in module WORC.processing.label_processing)
load_label_txt() (in module WORC.processing.label_processing)
load_label_XNAT() (in module WORC.processing.label_processing)
load_labels() (in module WORC.processing.label_processing)
log_uniform (class in WORC.classification.AdvancedSampler)
M
main() (in module WORC.plotting.plot_barchart)
(in module WORC.plotting.plot_ROC)
(in module WORC.plotting.plot_SVM)
(in module WORC.plotting.plot_boxplot)
(in module WORC.plotting.plot_ranked_scores)
(in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
match() (WORC.processing.classes.switch method)
multi_class_auc() (in module WORC.classification.metrics)
multi_class_auc_score() (in module WORC.classification.metrics)
multi_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
N
neg_dual_func() (in module WORC.classification.RankedSVM)
P
pairwise_auc() (in module WORC.classification.metrics)
paracheck() (in module WORC.plotting.plot_barchart)
performance_multilabel() (in module WORC.classification.metrics)
performance_singlelabel() (in module WORC.classification.metrics)
plot_barchart() (in module WORC.plotting.plot_barchart)
plot_bars() (in module WORC.plotting.plot_barchart)
plot_im_and_overlay() (in module WORC.plotting.plot_images)
plot_ranked_images() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_percentages() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_posteriors() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_scores() (in module WORC.plotting.plot_ranked_scores)
plot_ROC() (in module WORC.plotting.plot_ROC)
plot_ROC_CIc() (in module WORC.plotting.plot_ROC)
plot_single_ROC() (in module WORC.plotting.plot_ROC)
plot_SVM() (in module WORC.plotting.plot_SVM)
predict() (WORC.classification.estimators.RankedSVM method)
predict_proba() (WORC.classification.estimators.RankedSVM method)
R
RankedSVM (class in WORC.classification.estimators)
RankSVM_test() (in module WORC.classification.RankedSVM)
RankSVM_test_original() (in module WORC.classification.RankedSVM)
RankSVM_train() (in module WORC.classification.RankedSVM)
RankSVM_train_old() (in module WORC.classification.RankedSVM)
ROC_thresholding() (in module WORC.plotting.plot_ROC)
rvs() (WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
S
SelectGroups (class in WORC.featureprocessing.SelectGroups)
SelectIndividuals (class in WORC.featureprocessing.SelectIndividuals)
SelectMulticlassRelief (class in WORC.featureprocessing.Relief)
set() (WORC.tools.Evaluate.Evaluate method)
(WORC.WORC.WORC method)
(WORC.tools.Slicer.Slicer method)
single_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
sink_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
Slicer (class in WORC.tools.Slicer)
slicer() (in module WORC.plotting.plot_images)
source_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
StatisticalTestThreshold (class in WORC.featureprocessing.StatisticalTestThreshold)
switch (class in WORC.processing.classes)
T
Tools (class in WORC.WORC)
transform() (WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
Transformix (class in WORC.tools.Transformix)
W
WORC (class in WORC.WORC)
WORC.__init__ (module)
WORC.addexceptions (module)
WORC.classification.AdvancedSampler (module)
WORC.classification.construct_classifier (module)
WORC.classification.estimators (module)
WORC.classification.metrics (module)
WORC.classification.RankedSVM (module)
WORC.featureprocessing (module)
WORC.featureprocessing.Imputer (module)
WORC.featureprocessing.Relief (module)
WORC.featureprocessing.SelectGroups (module)
WORC.featureprocessing.SelectIndividuals (module)
WORC.featureprocessing.StatisticalTestThreshold (module)
WORC.IOparser.config_io_classifier (module)
WORC.IOparser.config_preprocessing (module)
WORC.IOparser.config_segmentix (module)
WORC.IOparser.config_WORC (module)
WORC.IOparser.file_io (module)
WORC.plotting.compute_CI (module)
WORC.plotting.linstretch (module)
WORC.plotting.plot_barchart (module)
WORC.plotting.plot_boxplot (module)
WORC.plotting.plot_images (module)
WORC.plotting.plot_ranked_scores (module)
WORC.plotting.plot_ROC (module)
WORC.plotting.plot_SVM (module)
WORC.processing.classes (module)
WORC.processing.ExtractNLargestBlobsn (module)
WORC.processing.label_processing (module)
WORC.resources.fastr_tests.CalcFeatures_test (module)
WORC.resources.fastr_tests.elastix_test (module)
WORC.resources.fastr_tests.segmentix_test (module)
WORC.tools.Elastix (module)
WORC.tools.Evaluate (module)
WORC.tools.Slicer (module)
WORC.tools.Transformix (module)
WORC.WORC (module)
WORCAssertionError
WORCError
WORCIndexError
WORCIOError
WORCKeyError
WORCNotImplementedError
WORCTypeError
WORCValueError