API

Import MESA as:

import mesa as ms

Multiomics

Ecospatial

ecospatial.generate_patches(spatial_data, ...)	Generate a list of patches from a spatial data object.
ecospatial.calculate_shannon_entropy(counts)	Calculate the Shannon entropy of a set of counts.
ecospatial.calculate_diversity_index(...[, ...])	Calculate the heterogeneity index for a set of patches.
ecospatial.multiscale_diversity(...[, mode, ...])	Calculate the multiscale neighbourhood heterogeneity.
ecospatial.diversity_heatmap(spatial_data, ...)	This function visualizes the heterogeneity indices as a heatmap on the original spatial data.
ecospatial.global_moran(grid[, tissue_only, ...])	Perform global Moran's I test for spatial autocorrelation.
ecospatial.local_moran(grid[, tissue_only, ...])	Perform local Moran's I test (LISA) for local spatial autocorrelation