{% extends "layout.html" %} {% from "overview/institute_sidebar.html" import institute_actionbar %} {% from "clinvar/clinvar_howto.html" import clinvar_howto_modal %} {% block title %} {{ super() }} - {{ institute.display_name }} {% endblock %} {% block top_nav %} {{ super() }}
No ClinVar submissions found. You can create one by choosing one or more pinned variants on a case page and clicking the button "Submit to ClinVar".
{% endif %}Name | Type | Case | Refseq | Gene | HGVS | Classification | Added by | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
{{loop.index}} | {% if subm_variant.category == 'sv' %} {% do var_key_name.update( {subm_variant.local_id : '_'.join([subm_variant.var_type, subm_variant.chromosome, subm_variant.breakpoint1 or subm_variant.outer_start or ""]) }) %}{% if "N/A" not in case_name %} {{var_key_name[subm_variant.local_id]|truncate(25,true,'..')}} {% else %} {{ var_key_name[subm_variant.local_id]|truncate(25,true,'..') }} (N/A) {% endif %} | SV |
{% else %}
{% if subm_variant.ref_seq and subm_variant.hgvs %}
{% do var_key_name.update( {subm_variant.local_id : '_'.join([subm_variant.ref_seq, subm_variant.hgvs])} ) %}
{% else %}
{% do var_key_name.update({subm_variant.local_id : '_'.join([subm_variant.chromosome, subm_variant.start, subm_variant.ref[0:5], subm_variant.alt[0:5]]) }) %}
{% endif %}
{% if "N/A" not in case_name %} {{var_key_name[subm_variant.local_id]|truncate(25,true,'..')}} {% else %} {{ var_key_name[subm_variant.local_id]|truncate(25,true,'..') }} (N/A) {% endif %} | SNV |
{% endif %}
{{ case_link(institute_id=institute._id, case_name=case_name) }} | {{subm_variant.ref_seq or '-'}} | {{subm_variant.gene_symbol or '-'}} | {{subm_variant.hgvs|truncate(100,true,'..') or '-'}} | {{subm_variant.clinsig}} | {{subm_variant.added_by or "N/A"}} | |||
|
This submission is open but has no variants yet.
{% endif %}Individual | Case | Variant | Allele origin | ||||
---|---|---|---|---|---|---|---|
{{loop.index}} | {{ case_link(institute_id=institute._id, case_name=subm_obj.cases[case.case_id]) }} | {{var_key_name[case.linking_id]|truncate(100,true,'..')}} | {{case.allele_origin}} | ||||
No case data provided for the above variants
{% endif %}