pymusepipe
2.16.1
Welcome
Install
Getting Started
Alignment
Mosaicking
Convolution
PHANGS pipeline example
License
Authors
Changelog
Module Reference
pymusepipe
Docs
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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J
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L
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M
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N
|
O
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P
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R
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S
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T
|
U
|
W
A
abspath() (in module pymusepipe.util_pipe)
add_key_dataset_expo() (in module pymusepipe.util_pipe)
add_listpath() (in module pymusepipe.prep_recipes_pipe)
add_string() (in module pymusepipe.util_pipe)
add_suffix_tokeys() (in module pymusepipe.init_musepipe)
AlignMuseDataset (class in pymusepipe.align_pipe)
analyse_musemode() (in module pymusepipe.util_pipe)
append_file() (in module pymusepipe.util_pipe)
apply_extra_offset_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
apply_optical_flow_offset_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
apply_optical_flow_offset_listima() (pymusepipe.align_pipe.AlignMuseDataset method)
arcsec_to_pixel() (in module pymusepipe.align_pipe)
astropy_convolve() (pymusepipe.mpdaf_pipe.MuseCube method)
B
BasicFile (class in pymusepipe.mpdaf_pipe)
BasicPSF (class in pymusepipe.mpdaf_pipe)
build_dict_exposures() (in module pymusepipe.combine)
build_filterlist_images() (pymusepipe.mpdaf_pipe.MuseCube method)
build_list() (pymusepipe.mpdaf_pipe.MuseCubeMosaic method)
C
check_given_images() (pymusepipe.check_pipe.CheckPipe method)
check_master_bias_flat() (pymusepipe.check_pipe.CheckPipe method)
check_quadrants() (pymusepipe.check_pipe.CheckPipe method)
check_sky_spectra() (pymusepipe.check_pipe.CheckPipe method)
check_white_line_images() (pymusepipe.check_pipe.CheckPipe method)
CheckPipe (class in pymusepipe.check_pipe)
checksum (pymusepipe.recipes_pipe.PipeRecipes property)
chunk_stats() (in module pymusepipe.util_pipe)
Circle_Zone (class in pymusepipe.util_pipe)
close() (pymusepipe.graph_pipe.GraphMuse method)
combine_target() (pymusepipe.target_sample.MusePipeSample method)
combine_target_per_pointing() (pymusepipe.target_sample.MusePipeSample method)
compare() (pymusepipe.align_pipe.AlignMuseDataset method)
compare_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
convolution_kernel() (in module pymusepipe.cube_convolve)
convolution_kernel_gaussian() (in module pymusepipe.cube_convolve)
convolve_cube_to_psf() (pymusepipe.mpdaf_pipe.MuseCube method)
convolve_cubes() (pymusepipe.mpdaf_pipe.MuseCubeMosaic method)
convolve_mosaic_per_pointing() (pymusepipe.target_sample.MusePipeSample method)
create_all_pointings_wcs() (pymusepipe.combine.MusePointings method)
create_combined_wcs() (pymusepipe.combine.MusePointings method)
create_mask() (pymusepipe.mpdaf_pipe.PixTableToMask method)
create_new_timestamp() (pymusepipe.util_pipe.TimeStampDict method)
create_offset_table() (in module pymusepipe.align_pipe)
create_pointing_wcs() (pymusepipe.combine.MusePointings method)
create_reference_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
create_reference_wcs() (pymusepipe.combine.MusePointings method)
(pymusepipe.target_sample.MusePipeSample method)
create_time_name() (in module pymusepipe.util_pipe)
crop_data() (in module pymusepipe.util_pipe)
cube_convolve() (in module pymusepipe.cube_convolve)
cube_kernel() (in module pymusepipe.cube_convolve)
cube_names (pymusepipe.mpdaf_pipe.MuseCubeMosaic property)
D
delete_timestamp() (pymusepipe.util_pipe.TimeStampDict method)
doppler_shift() (in module pymusepipe.util_pipe)
E
esorex (pymusepipe.recipes_pipe.PipeRecipes property)
ExposureInfo (class in pymusepipe.util_pipe)
extract_combined_narrow_wcs() (pymusepipe.combine.MusePointings method)
extract_onespectral_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
F
filter_list_with_pdict() (in module pymusepipe.util_pipe)
filter_list_with_suffix_list() (in module pymusepipe.util_pipe)
filtermed_image() (in module pymusepipe.util_pipe)
finalise_reduction() (pymusepipe.target_sample.MusePipeSample method)
find_cross_peak() (pymusepipe.align_pipe.AlignMuseDataset method)
find_cross_peak_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
find_cross_peak_listima() (pymusepipe.align_pipe.AlignMuseDataset method)
flatclean_image() (in module pymusepipe.util_pipe)
formatted_time() (in module pymusepipe.util_pipe)
full_list_datasets (pymusepipe.combine.MusePointings property)
G
gaussian_kernel() (in module pymusepipe.cube_convolve)
get_align_group() (pymusepipe.prep_recipes_pipe.PipePrep method)
get_conversion_factor() (in module pymusepipe.align_pipe)
get_dataset_name() (in module pymusepipe.util_pipe)
get_emissionline_band() (in module pymusepipe.util_pipe)
get_emissionline_image() (pymusepipe.mpdaf_pipe.MuseCube method)
get_emissionline_wavelength() (in module pymusepipe.util_pipe)
get_filter_image() (pymusepipe.mpdaf_pipe.MuseCube method)
get_flux_range() (in module pymusepipe.util_pipe)
get_fwhm_startend() (pymusepipe.mpdaf_pipe.MuseImage method)
get_image_from_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
get_imaref_muse() (pymusepipe.align_pipe.AlignMuseDataset method)
get_list_datasets() (in module pymusepipe.combine)
get_list_exposures() (in module pymusepipe.combine)
get_list_periods() (in module pymusepipe.combine)
get_list_reduced_pixtables() (in module pymusepipe.combine)
get_list_targets() (in module pymusepipe.combine)
get_normfactor() (in module pymusepipe.util_pipe)
(pymusepipe.mpdaf_pipe.MuseSkyContinuum method)
get_normfactor_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
get_polynorm() (in module pymusepipe.util_pipe)
get_quadrant_spectra_from_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
get_set_spectra() (pymusepipe.mpdaf_pipe.MuseCube method)
get_shift_from_pcc() (pymusepipe.align_pipe.AlignMuseDataset method)
get_shift_from_pcc_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
get_shift_from_pcc_listima() (pymusepipe.align_pipe.AlignMuseDataset method)
get_sky_spectrum() (in module pymusepipe.mpdaf_pipe)
get_spectrum_from_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
get_suffix_product() (in module pymusepipe.config_pipe)
get_tpl_nexpo() (in module pymusepipe.util_pipe)
get_whiteimage_from_cube() (pymusepipe.mpdaf_pipe.MuseCube method)
goto_folder() (pymusepipe.combine.MusePointings method)
(pymusepipe.musepipe.MusePipe method)
goto_origfolder() (pymusepipe.combine.MusePointings method)
(pymusepipe.musepipe.MusePipe method)
goto_prevfolder() (pymusepipe.combine.MusePointings method)
(pymusepipe.musepipe.MusePipe method)
GraphMuse (class in pymusepipe.graph_pipe)
I
imshow() (pymusepipe.mpdaf_pipe.PixTableToMask method)
init_combine() (pymusepipe.target_sample.MusePipeSample method)
init_default_param() (pymusepipe.init_musepipe.InitMuseParameters method)
init_guess_offset() (pymusepipe.align_pipe.AlignMuseDataset method)
init_mosaic() (pymusepipe.target_sample.MusePipeSample method)
init_optical_flow() (pymusepipe.align_pipe.AlignMuseDataset method)
init_optical_flow_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
init_optical_flow_listima() (pymusepipe.align_pipe.AlignMuseDataset method)
init_plot_optical_flow() (in module pymusepipe.align_pipe)
init_raw_table() (pymusepipe.musepipe.MusePipe method)
InitMuseParameters (class in pymusepipe.init_musepipe)
insert_suffix() (in module pymusepipe.target_sample)
integrate() (pymusepipe.mpdaf_pipe.MuseSkyContinuum method)
integrate_spectrum() (in module pymusepipe.mpdaf_pipe)
is_sequence() (in module pymusepipe.align_pipe)
iterate_on_optical_flow_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
iterate_on_optical_flow_listima() (pymusepipe.align_pipe.AlignMuseDataset method)
J
joinprod() (pymusepipe.recipes_pipe.PipeRecipes method)
L
list_cubes (pymusepipe.mpdaf_pipe.MuseCubeMosaic property)
lower_allbutfirst_letter() (in module pymusepipe.util_pipe)
lower_rep() (in module pymusepipe.util_pipe)
M
madcombine() (pymusepipe.mpdaf_pipe.MuseCubeMosaic method)
mask_pixtable() (pymusepipe.mpdaf_pipe.PixTableToMask method)
mask_trail() (pymusepipe.mpdaf_pipe.MuseCube method)
(pymusepipe.mpdaf_pipe.MuseImage method)
merge (pymusepipe.recipes_pipe.PipeRecipes property)
merge_dict() (in module pymusepipe.util_pipe)
module
pymusepipe
pymusepipe.align_pipe
pymusepipe.check_pipe
pymusepipe.combine
pymusepipe.config_pipe
pymusepipe.create_sof
pymusepipe.cube_convolve
pymusepipe.emission_lines
pymusepipe.graph_pipe
pymusepipe.init_musepipe
pymusepipe.mpdaf_pipe
pymusepipe.musepipe
pymusepipe.prep_recipes_pipe
pymusepipe.recipes_pipe
pymusepipe.target_sample
pymusepipe.util_pipe
pymusepipe.version
moffat_kernel() (in module pymusepipe.cube_convolve)
mosaic() (pymusepipe.target_sample.MusePipeSample method)
MuseCube (class in pymusepipe.mpdaf_pipe)
MuseCubeMosaic (class in pymusepipe.mpdaf_pipe)
MuseFilter (class in pymusepipe.mpdaf_pipe)
MuseImage (class in pymusepipe.mpdaf_pipe)
musemode (pymusepipe.musepipe.MusePipe property)
MusePipe (class in pymusepipe.musepipe)
MusePipeSample (class in pymusepipe.target_sample)
MusePipeTarget (class in pymusepipe.target_sample)
MusePointings (class in pymusepipe.combine)
MuseSetImages (class in pymusepipe.mpdaf_pipe)
MuseSetSpectra (class in pymusepipe.mpdaf_pipe)
MuseSkyContinuum (class in pymusepipe.mpdaf_pipe)
MuseSpectrum (class in pymusepipe.mpdaf_pipe)
my_linear_model() (in module pymusepipe.util_pipe)
N
ncubes (pymusepipe.mpdaf_pipe.MuseCubeMosaic property)
norm_listpath() (in module pymusepipe.prep_recipes_pipe)
normpath() (in module pymusepipe.util_pipe)
O
offset_and_compare() (pymusepipe.align_pipe.AlignMuseDataset method)
open_hdu() (pymusepipe.align_pipe.AlignMuseDataset method)
open_new_wcs_figure() (in module pymusepipe.graph_pipe)
open_offset_table() (pymusepipe.align_pipe.AlignMuseDataset method)
P
PipeDict (class in pymusepipe.target_sample)
PipeObject (class in pymusepipe.musepipe)
PipePrep (class in pymusepipe.prep_recipes_pipe)
PipeRecipes (class in pymusepipe.recipes_pipe)
pixel_to_arcsec() (in module pymusepipe.align_pipe)
PixTableToMask (class in pymusepipe.mpdaf_pipe)
plot_compare_contours() (in module pymusepipe.graph_pipe)
plot_compare_cuts() (in module pymusepipe.graph_pipe)
plot_compare_diff() (in module pymusepipe.graph_pipe)
plot_page() (pymusepipe.graph_pipe.GraphMuse method)
plot_polypar() (in module pymusepipe.graph_pipe)
plot_set_images() (pymusepipe.graph_pipe.GraphMuse method)
plot_set_spectra() (pymusepipe.graph_pipe.GraphMuse method)
prepare_image() (in module pymusepipe.util_pipe)
print_cube_names() (pymusepipe.mpdaf_pipe.MuseCubeMosaic method)
print_debug() (in module pymusepipe.util_pipe)
print_emission_lines() (in module pymusepipe.emission_lines)
print_endline() (in module pymusepipe.util_pipe)
print_error() (in module pymusepipe.util_pipe)
print_fig() (in module pymusepipe.graph_pipe)
print_images_names() (pymusepipe.align_pipe.AlignMuseDataset method)
print_info() (in module pymusepipe.util_pipe)
print_musemodes() (pymusepipe.musepipe.MusePipe method)
print_my_function_name() (in module pymusepipe.prep_recipes_pipe)
print_offsets_and_norms() (pymusepipe.align_pipe.AlignMuseDataset method)
print_plot() (in module pymusepipe.check_pipe)
print_recipes() (pymusepipe.prep_recipes_pipe.PipePrep static method)
print_warning() (in module pymusepipe.util_pipe)
psf2d() (in module pymusepipe.cube_convolve)
psf3d() (in module pymusepipe.cube_convolve)
psf_array (pymusepipe.mpdaf_pipe.BasicPSF property)
pymusepipe
module
pymusepipe.align_pipe
module
pymusepipe.check_pipe
module
pymusepipe.combine
module
pymusepipe.config_pipe
module
pymusepipe.create_sof
module
pymusepipe.cube_convolve
module
pymusepipe.emission_lines
module
pymusepipe.graph_pipe
module
pymusepipe.init_musepipe
module
pymusepipe.mpdaf_pipe
module
pymusepipe.musepipe
module
pymusepipe.prep_recipes_pipe
module
pymusepipe.recipes_pipe
module
pymusepipe.target_sample
module
pymusepipe.util_pipe
module
pymusepipe.version
module
pypher_script() (in module pymusepipe.cube_convolve)
R
read() (pymusepipe.mpdaf_pipe.MuseFilter method)
(pymusepipe.mpdaf_pipe.MuseSkyContinuum method)
read_all_astro_tables() (pymusepipe.musepipe.MusePipe method)
read_astropy_table() (pymusepipe.musepipe.MusePipe method)
read_param_file() (pymusepipe.init_musepipe.InitMuseParameters method)
rebin_spatial() (pymusepipe.mpdaf_pipe.MuseCube method)
recipe_align() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_bias() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_combine() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_combine_pointings() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_flat() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_lsf() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_scibasic() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_scipost() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_sky() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_std() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_twilight() (pymusepipe.recipes_pipe.PipeRecipes method)
recipe_wave() (pymusepipe.recipes_pipe.PipeRecipes method)
reconstruct_filter_images() (in module pymusepipe.util_pipe)
Rectangle_Zone (class in pymusepipe.util_pipe)
reduce_all_targets() (pymusepipe.target_sample.MusePipeSample method)
reduce_target() (pymusepipe.target_sample.MusePipeSample method)
reduce_target_postalign() (pymusepipe.target_sample.MusePipeSample method)
reduce_target_prealign() (pymusepipe.target_sample.MusePipeSample method)
regress_odr() (in module pymusepipe.util_pipe)
reset_mask() (pymusepipe.mpdaf_pipe.MuseImage method)
retrieve_geoastro_name() (pymusepipe.musepipe.MusePipe method)
rotate_cube_wcs() (in module pymusepipe.util_pipe)
rotate_image_wcs() (in module pymusepipe.util_pipe)
rotate_pixtable() (in module pymusepipe.align_pipe)
rotate_pixtables() (in module pymusepipe.align_pipe)
rotate_pixtables_target() (pymusepipe.target_sample.MusePipeSample method)
run_align_bydataset() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_align_bygroup() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_autocal_sky() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_bias() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_check_align() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_combine() (pymusepipe.combine.MusePointings method)
run_combine_all_single_pointings() (pymusepipe.combine.MusePointings method)
run_combine_dataset() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_combine_single_pointing() (pymusepipe.combine.MusePointings method)
run_fine_alignment() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_flat() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_lsf() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_on_all_keys() (pymusepipe.target_sample.PipeDict method)
run_optical_flow() (pymusepipe.align_pipe.AlignMuseDataset method)
run_optical_flow_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
run_oscommand() (pymusepipe.recipes_pipe.PipeRecipes method)
run_phangs_recipes() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_prep_align() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_recipes() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_scibasic() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_scibasic_all() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_scipost() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_scipost_perexpo() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_scipost_sky() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_sky() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_standard() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_target_recipe() (pymusepipe.target_sample.MusePipeSample method)
run_target_scipost_perexpo() (pymusepipe.target_sample.MusePipeSample method)
run_twilight() (pymusepipe.prep_recipes_pipe.PipePrep method)
run_wave() (pymusepipe.prep_recipes_pipe.PipePrep method)
S
safely_create_folder() (in module pymusepipe.util_pipe)
save_expo_table() (pymusepipe.musepipe.MusePipe method)
save_fine_alignment() (pymusepipe.prep_recipes_pipe.PipePrep method)
save_fits_offset_table() (pymusepipe.align_pipe.AlignMuseDataset method)
save_image() (pymusepipe.align_pipe.AlignMuseDataset method)
save_mask() (pymusepipe.mpdaf_pipe.MuseCube method)
(pymusepipe.mpdaf_pipe.MuseImage method)
(pymusepipe.mpdaf_pipe.PixTableToMask method)
save_normalised() (pymusepipe.mpdaf_pipe.MuseSkyContinuum method)
save_polypar_ima() (pymusepipe.align_pipe.AlignMuseDataset method)
savepage() (pymusepipe.graph_pipe.GraphMuse method)
select() (pymusepipe.util_pipe.Circle_Zone method)
(pymusepipe.util_pipe.Rectangle_Zone method)
(pymusepipe.util_pipe.Trail_Zone method)
select_spaxels() (in module pymusepipe.util_pipe)
select_tpl_files() (pymusepipe.prep_recipes_pipe.PipePrep method)
Selection_Zone (class in pymusepipe.util_pipe)
set_fullpath_names() (pymusepipe.combine.MusePointings method)
(pymusepipe.musepipe.MusePipe method)
set_pipe_target() (pymusepipe.target_sample.MusePipeSample method)
setdefault() (pymusepipe.target_sample.PipeDict method)
show_linearfit_values() (pymusepipe.align_pipe.AlignMuseDataset method)
show_norm_factors() (pymusepipe.align_pipe.AlignMuseDataset method)
show_offset_fromfits() (pymusepipe.align_pipe.AlignMuseDataset method)
show_offsets() (pymusepipe.align_pipe.AlignMuseDataset method)
SofDict (class in pymusepipe.create_sof)
SofPipe (class in pymusepipe.create_sof)
sort_raw_tables() (pymusepipe.musepipe.MusePipe method)
start_page() (pymusepipe.graph_pipe.GraphMuse method)
T
TimeStampDict (class in pymusepipe.util_pipe)
Trail_Zone (class in pymusepipe.util_pipe)
U
update() (pymusepipe.mpdaf_pipe.MuseSetImages method)
(pymusepipe.mpdaf_pipe.MuseSetSpectra method)
(pymusepipe.target_sample.PipeDict method)
update_calib_file() (in module pymusepipe.target_sample)
W
write_errlogfile() (pymusepipe.recipes_pipe.PipeRecipes method)
write_logfile() (pymusepipe.recipes_pipe.PipeRecipes method)
write_outlogfile() (pymusepipe.recipes_pipe.PipeRecipes method)
write_sof() (pymusepipe.create_sof.SofPipe method)