Source code for deprecation_check
#!/usr/bin/env python3
import os
import pymzml
[docs]def main():
"""
Testscript to highlight the function name changes in the Spectrum class.
Note:
Please adjust any old scripts to the new syntax.
usage:
./deprecation_check.py
"""
example_file = os.path.join(
os.path.dirname(__file__),
os.pardir,
'tests',
'data',
'example.mzML'
)
run = pymzml.run.Reader(example_file,)
spectrum_list = [ ]
for pos, spectrum in enumerate(run):
spectrum_list.append(spectrum)
spectrum.hasPeak( ( 813.19073486 ) )
spectrum.extremeValues( 'mz' )
spectrum.hasOverlappingPeak( 813.19073486 )
spectrum.highestPeaks( 1 )
spectrum.estimatedNoiseLevel()
spectrum.removeNoise()
spectrum.transformMZ( 813.19073486 )
if pos == 1:
spectrum.similarityTo(
spectrum_list[0]
)
break
if __name__ == '__main__':
main()