LICENSE
MANIFEST.in
README.rst
setup.py
sistr/__init__.py
sistr/sistr_cmd.py
sistr/version.py
sistr/data/Salmonella-serotype_serogroup_antigen_table-WHO_2007.csv
sistr/data/genomes-to-serovar.txt
sistr/data/genomes-to-subspecies.txt
sistr/data/sistr.msh
sistr/data/antigens/fliC.fasta
sistr/data/antigens/fljB.fasta
sistr/data/antigens/wzx.fasta
sistr/data/antigens/wzy.fasta
sistr/data/cgmlst/cgmlst-centroid.fasta
sistr/data/cgmlst/cgmlst-full.fasta
sistr/data/cgmlst/cgmlst-profiles.csv
sistr/misc/__init__.py
sistr/misc/add_ref_genomes.py
sistr/misc/hc_clusters_from_cgmlst_profiles.py
sistr/misc/reduce_to_centroid_alleles.py
sistr/src/__init__.py
sistr/src/logger.py
sistr/src/mash.py
sistr/src/parsers.py
sistr/src/writers.py
sistr/src/blast_wrapper/__init__.py
sistr/src/blast_wrapper/helpers.py
sistr/src/cgmlst/__init__.py
sistr/src/cgmlst/msa.py
sistr/src/cgmlst/extras/__init__.py
sistr/src/cgmlst/extras/centroid_cgmlst_alleles.py
sistr/src/cgmlst/extras/hclust_cutree.py
sistr/src/qc/__init__.py
sistr/src/qc/constants.py
sistr/src/serovar_prediction/__init__.py
sistr/src/serovar_prediction/constants.py
sistr_cmd.egg-info/PKG-INFO
sistr_cmd.egg-info/SOURCES.txt
sistr_cmd.egg-info/dependency_links.txt
sistr_cmd.egg-info/entry_points.txt
sistr_cmd.egg-info/requires.txt
sistr_cmd.egg-info/top_level.txt