Source code for WORC.IOparser.config_segmentix

#!/usr/bin/env python

# Copyright 2016-2019 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.


import configparser


[docs]def load_config(config_file_path): """ Parse a segmentix configuration file. Arguments: config_file_path: path to the configuration file to be parsed. Returns: settings_dict: dictionary containing all parsed settings. """ settings = configparser.ConfigParser() settings.read(config_file_path) settings_dict = {'Segmentix': dict()} # Segmentation settings settings_dict['Sementix'] = dict() settings_dict['Segmentix']['type'] =\ str(settings['Segmentix']['segtype']) settings_dict['Segmentix']['mask'] =\ str(settings['Segmentix']['mask']) settings_dict['Segmentix']['radius'] =\ int(settings['Segmentix']['segradius']) settings_dict['Segmentix']['N_blobs'] =\ int(settings['Segmentix']['N_blobs']) settings_dict['Segmentix']['fillholes'] =\ settings['Segmentix'].getboolean('fillholes') return settings_dict