Last updated on 2026-03-21 21:53:26 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 14 | ||
| mlr | 2 | 12 | |
| mlr3pipelines | 3 | 11 | |
| mlrMBO | 14 | ||
| paradox | 14 | ||
| ParamHelpers | 14 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 11
Version: 0.11.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [88s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-22 09:19:25.1387: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.138929: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.141814: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.147792: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.158477: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.158577: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.160809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.166773: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.173216: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.173455: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.177975: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.192043: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.192436: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.198447: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.198551: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.203104: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.217887: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.218226: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.239759: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.239863: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.244112: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.281908: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.293325: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.293499: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.3011: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.376026: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.377082: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.411972: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.412146: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.414582: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.420199: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.428138: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.428299: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.433054: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.452479: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.453927: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.487132: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.487276: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.489618: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.495719: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.507918: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.508109: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.512453: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.527134: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.527473: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.544483: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.544603: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.546817: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.552858: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.564738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.564915: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.569316: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.584098: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.58443: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.612439: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.612562: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.614893: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.621277: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.632939: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.633105: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.637614: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.652505: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.652874: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.671231: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.671385: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.673677: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.679757: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.690898: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.691038: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.69497: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.708907: embedding
> test_pipeop_isomap.R: 2026-03-22 09:19:25.709399: DONE
> test_pipeop_isomap.R: 2026-03-22 09:19:25.730344: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.730472: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.738604: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.74498: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.765185: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.765317: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.767413: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.773433: Classical Scaling
> test_pipeop_isomap.R: 2026-03-22 09:19:25.779209: Isomap START
> test_pipeop_isomap.R: 2026-03-22 09:19:25.779331: constructing knn graph
> test_pipeop_isomap.R: 2026-03-22 09:19:25.781387: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-22 09:19:25.787467: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_info.R:3:1',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [255s/203s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-21 12:11:37.446109: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:37.446627: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:37.482073: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:37.522864: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:37.634268: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:37.634613: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:37.641612: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:37.686522: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:37.734847: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:37.735291: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:37.752854: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:37.815024: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:37.816183: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:37.873707: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:37.874061: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:37.892318: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:37.955463: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:37.956677: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:38.146747: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:38.147055: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:38.172842: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:38.318742: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:38.35738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:38.357811: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:38.416335: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:38.740476: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:38.746488: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:38.934695: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:38.935037: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:38.951206: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:38.980111: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:39.016526: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.016976: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.045025: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.100771: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:39.105587: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:39.285268: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.285605: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.298516: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.322424: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:39.378851: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.379287: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.400288: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.463492: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:39.467673: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:39.550391: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.55069: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.564123: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.590853: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:39.644265: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.64471: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.669171: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.729731: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:39.749222: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:39.841482: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.84179: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.857454: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:39.878573: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:39.937448: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:39.937884: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:39.963512: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:40.025306: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:40.026477: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:40.119135: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:40.119438: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:40.136421: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:40.170979: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:40.22786: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 12:11:40.229325: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:40.716301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:40.77718: embedding
> test_pipeop_isomap.R: 2026-03-21 12:11:40.778259: DONE
> test_pipeop_isomap.R: 2026-03-21 12:11:40.870586: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:40.870878: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:40.88492: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:40.903671: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:40.995884: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:40.996168: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:41.010651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:41.03012: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 12:11:41.057481: Isomap START
> test_pipeop_isomap.R: 2026-03-21 12:11:41.057764: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 12:11:41.072105: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 12:11:41.099637: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_dictionary.R:7:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_info.R:3:1', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_smote.R:10:3', 'test_pipeop_splines.R:3:1',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'testthat.R' [241s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-03-21 09:56:44.10454: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.10562: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.210018: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.22703: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.29978: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.300435: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.311312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.333316: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.375978: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.376878: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.399255: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.448011: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:44.44988: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:44.492805: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.493454: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.526098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.572934: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:44.57464: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:44.700595: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.701071: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.71812: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:44.809124: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:44.854889: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:44.855841: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:44.903367: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:45.167439: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:45.189331: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:45.431342: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:45.431993: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:45.445666: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:45.466393: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:45.517686: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:45.518469: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.013246: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.053742: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.054882: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.255643: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.256126: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.263998: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.280174: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.335375: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.336352: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.357125: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.407: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.408494: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.528858: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.529568: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.54237: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.565152: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.643738: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.644684: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.667131: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.717165: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:46.719278: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:46.84486: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.845518: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.857384: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:46.879693: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:46.950984: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:46.951666: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:46.983112: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.035234: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:47.036806: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:47.157409: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.158036: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.167149: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.185801: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.256504: L-Isomap embed START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.257479: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.280021: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.330169: embedding
> test_pipeop_isomap.R: 2026-03-21 09:56:47.331501: DONE
> test_pipeop_isomap.R: 2026-03-21 09:56:47.468806: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.469512: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.481683: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.504757: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.637511: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.638203: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.649583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.672321: Classical Scaling
> test_pipeop_isomap.R: 2026-03-21 09:56:47.710758: Isomap START
> test_pipeop_isomap.R: 2026-03-21 09:56:47.711433: constructing knn graph
> test_pipeop_isomap.R: 2026-03-21 09:56:47.723261: calculating geodesic distances
> test_pipeop_isomap.R: 2026-03-21 09:56:47.746071: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
══ Skipped tests (128) ═════════════════════════════════════════════════════════
• On CRAN (125): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_doublearrow.R:2:1', 'test_gunion.R:2:1',
'test_learner_weightedaverage.R:5:3', 'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_dictionary.R:7:3',
'test_meta.R:39:3', 'test_mlr_graphs_branching.R:26:3',
'test_mlr_graphs_bagging.R:6:3', 'test_mlr_graphs_robustify.R:5:3',
'test_pipeop_adas.R:8:3', 'test_pipeop_blsmote.R:8:3',
'test_pipeop_branch.R:4:3', 'test_pipeop_chunk.R:4:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_classweightsex.R:9:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_ensemble.R:3:1',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_info.R:3:1', 'test_pipeop_impute.R:4:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_learnerpicvplus.R:2:1',
'test_pipeop_learnercv.R:3:3', 'test_pipeop_learnercv.R:43:3',
'test_pipeop_learnercv.R:73:3', 'test_pipeop_learnercv.R:92:3',
'test_pipeop_learnercv.R:141:3', 'test_pipeop_learnercv.R:157:3',
'test_pipeop_learnercv.R:203:3', 'test_pipeop_learnercv.R:249:3',
'test_pipeop_learnercv.R:278:3', 'test_pipeop_learnercv.R:332:3',
'test_pipeop_learnercv.R:359:3', 'test_pipeop_learnercv.R:389:3',
'test_pipeop_learnercv.R:399:3', 'test_pipeop_learnercv.R:432:3',
'test_pipeop_learnercv.R:472:3', 'test_pipeop_learnercv.R:481:3',
'test_pipeop_learnercv.R:498:3', 'test_pipeop_learnercv.R:506:3',
'test_pipeop_learnercv.R:530:3', 'test_pipeop_learnercv.R:554:3',
'test_pipeop_learnercv.R:634:3', 'test_pipeop_learnercv.R:654:3',
'test_pipeop_learnercv.R:669:3', 'test_pipeop_learnercv.R:754:3',
'test_pipeop_learnercv.R:799:3', 'test_pipeop_learnercv.R:827:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:2:1', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_spatialsign.R:3:1',
'test_pipeop_splines.R:3:1', 'test_pipeop_nmf.R:6:3',
'test_pipeop_targetinvert.R:4:3', 'test_pipeop_targetmutate.R:5:3',
'test_pipeop_targettrafo.R:4:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_tomek.R:7:3',
'test_pipeop_textvectorizer.R:37:3', 'test_pipeop_textvectorizer.R:186:3',
'test_pipeop_unbranch.R:10:3', 'test_pipeop_updatetarget.R:89:3',
'test_pipeop_vtreat.R:9:3', 'test_pipeop_yeojohnson.R:7:3',
'test_ppl.R:63:3', 'test_typecheck.R:188:3',
'test_pipeop_tunethreshold.R:111:3', 'test_pipeop_tunethreshold.R:191:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (2): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 128 | PASS 8754 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14